EY659824

Overview
NameEY659824
Unique NameEY659824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8146 contig Csv1_Contig8146:145..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.885e-54
Identity = 110/238 (46.22%), Postives = 148/238 (62.18%), Query Frame = 2
Query:  167 AEYIWIGGT------GI---DMRSKSKTISKPVE-HPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPIE-GDWNGAG 844
            AEYIW  G       G+   +MRSK+K    P+    SE P W++DGSSTGQA G +S+ IL P  +  DP RG  ++LV+C+ + P G+P  TN R +  EI  + KV+AE  W+G EQEYT+L +      GWP G +P PQGP+YCG GA+ +FGR +A+AH +AC+ AG+ ISG N E MPGQW YQ+GP   +  GD +  SR+LL R      ++ +   KP+  GDWNG G
Sbjct:   37 AEYIWADGNEGKPEKGMIFNEMRSKTKCFEAPLGLDASEYPDWSFDGSSTGQAEGNNSDCILRPVRVVTDPIRGAPHVLVMCEVFAPDGKPHSTNTRAKLREIIDD-KVTAEDCWYGFEQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTG 273          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.554e-53
Identity = 109/229 (47.60%), Postives = 141/229 (61.57%), Query Frame = 2
Query:  167 AEYIWIGGTG--IDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPIEGDWNGAG 844
            AEYIWI GT     +RSK+K I+        LP W +DGSST QA G  S+ +L P     DP RGG++ILV+C+       P  +N R   AE+    + +A+ P FGIEQEYT  Q    +PLG+P G +P PQG YYCG GAD+ FGRD+ +AH   CL AG+ ISG N E MPGQW +QVGP   ++  DH+W +R+LL R+     V  +   KP++GDWNGAG
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEVAE--RFAAQEPIFGIEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAG 229          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.936e-49
Identity = 105/230 (45.65%), Postives = 139/230 (60.43%), Query Frame = 2
Query:  161 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGA-YPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPIEGDWNGAG 844
            I AEYIWI GT    + +SKT  K +   S LP+W +DGSST QA G  S+++L P     DP RGG+++LV+C+       P P+N R     +    + + + P FGIEQEYT L+ +   PLG+P G  YP PQ  YYCG GAD  FGR+I + H   CL AG+ +SG N E MPGQW +QVG    ++  DH+W +R+LL R   +  V  S  +KP +GDWNGAG
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKT--KILSDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPVAE--RFAGQEPIFGIEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAG 226          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.446e-46
Identity = 106/227 (46.70%), Postives = 129/227 (56.83%), Query Frame = 2
Query:  167 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPIEGDWNGAG 844
            AEYIWI GT  +   +SKT  + ++   E   W +DGSST QAPG +S+ +L P     DP RGG+N LV+C+       P PTN R  AA +    + +   P FGIEQEYT  +     P GWP   YP PQGPYYCG G  K  GR I + H +ACL AG+ I GTN E M GQW +Q+G       GD IW  R+LL R      V  S  +KPI GDWNGAG
Sbjct:    5 AEYIWIDGTEPEPLMRSKT--RIIKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNTR--AAALGVAERYADMSPMFGIEQEYTFFKDGR--PYGWPEVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAG 224          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA_DUNSA (Glutamine synthetase (Fragment) OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.121e-41
Identity = 79/129 (61.24%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  467 AEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLER---SLNQLVLFSH*SKPIEGDWNGAG 844
            A+ PWFGIEQEYTLL    KWPLGWP G YP  QGPYYC  GA +S GRDI + HY+ CL+AGI ISG NGE +P QW YQVGP  GI  GD +W SRYL+ R     N  V F    KPI GDWNG+G
Sbjct:    2 AQEPWFGIEQEYTLLNSVTKWPLGWPKGGYPAGQGPYYCSVGAGRSIGRDIPEVHYRCCLHAGIQISGVNGEVLPSQWEYQVGPVEGIAMGDQMWMSRYLMYRVAELFNVEVTFD--PKPIPGDWNGSG 128          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.552e-32
Identity = 90/233 (38.63%), Postives = 119/233 (51.07%), Query Frame = 2
Query:  170 EYIWIGGTGIDMRSKSKT-ISKPVEHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPI-EGDWNGAG 844
            EYIW+ G       + KT I +    P+  +LP W +DGSST QA G  S+ +L P A+F D  R  N +LV+C+   P G+ P  +NKR   A I  ++       WFG EQEY   +     PLG+P   YP PQGPYY G G        R I + H   CL AGIN  G N E   GQW +Q+       A D +W +RYL+ R   +  +      KP+ + DWNG+G
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAART-NGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEYFFYKDGR--PLGFPTSGYPAPQGPYYTGVGFSNVGDVARKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSG 228          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.994e-31
Identity = 94/236 (39.83%), Postives = 119/236 (50.42%), Query Frame = 2
Query:  158 KIIAEYIWIGGTGIDMRSKSKTISKPV-EHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPI-EGDWNGAG 844
            K   EYIW+ G       + KT  K   E P+  +LP W +DGSST QA G  S+ +L P AI+ DP R  N  LV+C+   P G    +N R   A I  +     E  WFG EQEY   Q     PLG+P   YP PQ PYY G G        R+I + H   CL AGIN  G N E   GQW +Q+       A D IW +RYLL+R   +  +   +  KP+ + DWNG+G
Sbjct:    3 KFKLEYIWLDGYTPVPNLRGKTQIKEFDEFPTLEQLPLWGFDGSSTMQAEGS-SDCVLKPVAIYPDPART-NGALVMCEVMMPDGHAHASNAR---ATILDD-----EDAWFGFEQEYFFYQNGR--PLGFPEQGYPAPQ-PYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSG 225          
BLAST of EY659824 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.607e-29
Identity = 87/233 (37.34%), Postives = 113/233 (48.50%), Query Frame = 2
Query:  170 EYIWIGGTGIDMRSKSKTISKPVE-HPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADK--SFGRDIADAHYKACLYAGINISGTNGEGMPGQWGYQVGPSVGIDAGDHIWGSRYLLERSLNQL-VLFSH*SKPI-EGDWNGAG 844
            EYIW+  T      + KT  K  +  P+  +LP W +DGSST QA G  S+ +L P  ++ DP R  N  LV+C+   P  E P  +N R    +         E  WFG EQEY   +     PLG+P   YP PQGPYY G G        R I + H   CL AGIN  G N E   GQW +Q+       A D +  +RYLL R   +  +      KP+ + DWNG+G
Sbjct:    7 EYIWLDATRPYQTLRGKTQIKEFDAFPTLEQLPLWGFDGSSTLQAEGRTSDCVLKPVTVYPDPVRT-NGALVMCEVMMPDAETPHASNTRATVLD--------DEGAWFGFEQEYFFYKNGR--PLGFPEQGYPAPQGPYYTGVGYKNVGDVARQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSG 228          
The following BLAST results are available for this feature:
BLAST of EY659824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE1.885e-5446.22Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA2_STRVR3.554e-5347.60Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY6.936e-4945.65Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL1.446e-4646.70Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA_DUNSA3.121e-4161.24Glutamine synthetase (Fragment) OS=Dunaliella sali... [more]
GLNA2_BRAJA1.552e-3238.63Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP4.994e-3139.83Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME1.607e-2937.34Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659824 ID=EY659824; Name=EY659824; organism=Citrus sinensis; type=EST; length=902bp
TCATCATCAGACGCGTCCGGCAATGGCCTTTCAAAAAAGAGGGAAAGGAA
CAAATAGGAGTTCTGCCAAGTTTAGAGTGCTTGTTTTGACATCTAAAGAC
AGCACTGTCAATAGGCTAGAGGATCTACTCAATTTGGACATCACTCCATA
TACTGACAAAATCATTGCCGAATATATTTGGATTGGAGGTACTGGGATTG
ATATGCGTAGCAAGTCAAAGACCATTTCAAAGCCTGTTGAGCATCCATCT
GAGCTTCCCAAGTGGAATTATGATGGATCAAGTACTGGACAGGCACCTGG
TGAAGATAGTGAAGTAATTTTATACCCTCAAGCAATTTTTAAGGACCCCT
TCCGTGGAGGAAACAACATCTTGGTAATTTGTGATACCTACACACCAGCA
GGCGAGCCCATCCCTACAAACAAACGCCATAGGGCTGCTGAAATTTTCAG
TAACTCGAAAGTGTCTGCTGAAGTTCCATGGTTTGGGATAGAGCAAGAGT
ACACCTTACTTCAACAAAATGTGAAATGGCCTCTGGGTTGGCCTGTTGGA
GCCTATCCTGGTCCCCAGGGTCCTTATTACTGTGGAGCTGGGGCTGATAA
GTCGTTTGGCCGTGACATTGCAGATGCTCATTACAAGGCTTGCTTGTATG
CTGGCATTAACATTAGTGGCACCAACGGGGAGGGTATGCCTGGCCAGTGG
GGATATCAAGTTGGTCCCAGTGTAGGCATTGATGCTGGAGATCATATATG
GGGGTCGAGATACCTTCTTGAGAGATCACTGAACCAGCTGGTGTTGTTCT
CTCACTGATCCAAACCAATTGAGGGAGACTGGAATGGTGCTGGATGCCCC
CCCATTTCCGTNCNAGAGTCCCAGAAAGGAAGGAGGTTTGAAACTTATAG
AA
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