EY659821

Overview
NameEY659821
Unique NameEY659821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig113 contig Csv1_Contig113:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 50/107 (46.73%), Postives = 69/107 (64.49%), Query Frame = 3
Query:   51 LIVAIIRDLXESFAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 368
            L   ++  L      + FL   L  M+VYVWS+++P + ++F GL TF A +LPW L+GFS+ +G S  VDLLG+  GH YYFLEDV+P    G+R L+TP F+K L
Sbjct:  102 LFGGVLMTLLGLLGSLFFLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLL 208          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 3
Query:   51 LIVAIIRDLXESFAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKALFAD 377
            L   ++  L      + FL   L  M+VYVWS+++P + ++F GL  F A +LPW L+GFS+ +G S   DLLG++ GH YYFLEDV+P    G+R L TPS +K L  D
Sbjct:  102 LFGGVLMTLLGFLGSLFFLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLLDD 211          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   51 LIVAIIRDLXESFAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKAL 368
            L   ++  L      + FL   L  M+VYVWS+++P + ++F GL TF A +LPW L+G  + +G S  VDLLG+  GH YYFLEDV+P    G+R L TPSF+K L
Sbjct:  102 LFGGVLMTLLGLLGSLFFLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLL 208          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  102 FLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFA 374
            FL   L  M++Y+WS++ P  ++S  GL T  A YLPW +L   V  G+    DLLG+IAGH YYFL  ++P  TG+  LKTP ++  + A
Sbjct:  119 FLGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHPLATGKNYLKTPKWVNKIVA 209          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   87 FAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 413
            F  I FL   +  M++YVWS++ P   +S  GL    + YLPW +LG  V  G+     LLG++ GH YYFL  ++P  TG+  LKTP ++  + A   + V   A VR
Sbjct:  114 FLDIYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHPLATGKNYLKTPMWVHKIVARFRIGVQANAPVR 222          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   51 LIVAIIRDLXESFAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPA 431
            L+V  I  L  SF    FL   +  M++YVWS++NP   ++  GL    + YLPW +L   V  G+S    LLG++ GH YYF   ++P  TG+  LKTP ++  + A   + +   + VR   PPA
Sbjct:  106 LLVLSIIPLFNSF----FLGIPMVSMLLYVWSRENPNAQINIYGLVQLRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHPLATGKSYLKTPKWVHKIVARFRIGMQANSPVR---PPA 225          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  126 MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVR 413
            M+VYVWS++NP   ++  G+    A YLPWV+L   V  G+     LLG++ GH YY+   ++P  TG+  LKTP ++  + A   + +   A VR
Sbjct:  127 MLVYVWSRENPNAQINIYGILQLKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHPLATGKNYLKTPKWVHKIVARFRIGMQANAPVR 222          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_DICDI (Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 3
Query:  102 FLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWV-LLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPL-KTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQ 446
            FL     + ++Y++S+ NP    +F G F+F   YLPWV L+   +  G   + D L +++GH +++L D+YPR  G   L KTP FI  +F         P NVR  P     + +
Sbjct:  117 FLGTMTIMSLIYIYSRMNPTGTSNFYGFFSFKTIYLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNIFNKGD---RNPNNVRRDPRTGRPIQE 230          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_MOUSE (Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  117 LPLMM--VYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPR-MTGRRPLKTPSFI 359
            +PL+M  +YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP  + GR  L TP F+
Sbjct:  123 IPLIMSVLYVWAQLNRDLIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206          
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_PONAB (Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  117 LPLMM--VYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPR-MTGRRPLKTPSFI 359
            +PL+M  +YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP  + GR  L TP F+
Sbjct:  123 IPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206          
The following BLAST results are available for this feature:
BLAST of EY659821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DERL3_HUMAN2.258e-2246.73Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL3_MOUSE1.121e-2144.55Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL3_BOVIN1.912e-2145.79Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]
DERL1_ARATH3.159e-1643.96Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ2.674e-1538.53Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE3.861e-1436.22Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE1.467e-1337.50Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_DICDI8.051e-1233.33Probable derlin-1 homolog OS=Dictyostelium discoid... [more]
DERL1_MOUSE3.996e-1142.86Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1[more]
DERL1_PONAB5.219e-1142.86Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659821 ID=EY659821; Name=EY659821; organism=Citrus sinensis; type=EST; length=727bp
GTCATCTTATGATACGGNCCGGAATTCCCTCGAAAAAGAGGCGTCCGGNT
CTTATTGTGGCGATAATAAGGGACTTGNCAGAATCATTTGCAAAAATCAT
TTTCCTTAGCAATTTTTTGCCCCTCATGATGGTTTATGTATGGAGCAAAC
AAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATTTACAGCA
GCTTACTTACCATGGGTGCTCTTGGGATTCTCAGTCTTCGTTGGCGCTAG
CGCTTGGGTGGATTTGCTGGGGATGATAGCCGGTCATGCCTACTATTTTC
TCGAAGATGTTTATCCTAGGATGACAGGTCGCCGGCCCTTAAAAACACCA
TCTTTTATCAAAGCACTGTTTGCGGATGAGGCTGTAGTGGTAGCACGGCC
TGCAAATGTGAGATTTGCTCCACCACCTGCAGAGGAAGTTCACCAAGACT
AATGAGAACCTTTGAGGGATGGGACTCTCTTGAGGGCTCACTTTTGGTTT
GTATTGATCTGTATGGGAAATCTGCGACCTGCAGAAGTGTTGTTTGACCA
TGTCTTGAAAGTATTTATGTGAACTAACTAATTATGGTGTTTATGTCATA
CGTACATTACAGATTAACTTTGGATATGGTAAATCCTGTTGGTGGTAAAT
CTGTCTGGAATTTGAAAATGAATTTTGTAATCTATACCTAGAGGAATGAA
AGATTGTAGTTAGTACAAAAAAAAAAA
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