EY659821

Overview
NameEY659821
Unique NameEY659821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3 
Query:  117 LPLMM--VYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPR-MTGRRPLKTPSFI 359
            +PL+M  +YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP  + GR  L TP F+
Sbjct:  123 IPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
[Close]
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_BOVIN (Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 3 
Query:  117 LPLMM--VYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPR-MTGRRPLKTPSFI 359
            +PL+M  +YVW++ N  + +SF     F A YLPWV+LGF+  +G S   +L+G + GH Y+FL   YP  + GR  L TP F+
Sbjct:  123 IPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
[Close]
BLAST of EY659821 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:   51 LIVAIIRDLXESFAKIIFLSNFLPLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRP-LKTPSFIKALFAD 377
            ++ A++ ++      + FL + L L + Y+W + N  + +SF     F A YLPWVL  F  F+   +   L+G+  GH YYF +  Y +  G  P L+TP F+K L  D
Sbjct:  102 IVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVLAAFE-FIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRLVPD 210
The following BLAST results are available for this feature:
BLAST of EY659821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DERL1_HUMAN5.219e-1142.86Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]
DERL1_BOVIN5.219e-1142.86Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1[more]
DERL1_DROME6.816e-1133.64Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659821 ID=EY659821; Name=EY659821; organism=Citrus sinensis; type=EST; length=727bp
GTCATCTTATGATACGGNCCGGAATTCCCTCGAAAAAGAGGCGTCCGGNT
CTTATTGTGGCGATAATAAGGGACTTGNCAGAATCATTTGCAAAAATCAT
TTTCCTTAGCAATTTTTTGCCCCTCATGATGGTTTATGTATGGAGCAAAC
AAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATTTACAGCA
GCTTACTTACCATGGGTGCTCTTGGGATTCTCAGTCTTCGTTGGCGCTAG
CGCTTGGGTGGATTTGCTGGGGATGATAGCCGGTCATGCCTACTATTTTC
TCGAAGATGTTTATCCTAGGATGACAGGTCGCCGGCCCTTAAAAACACCA
TCTTTTATCAAAGCACTGTTTGCGGATGAGGCTGTAGTGGTAGCACGGCC
TGCAAATGTGAGATTTGCTCCACCACCTGCAGAGGAAGTTCACCAAGACT
AATGAGAACCTTTGAGGGATGGGACTCTCTTGAGGGCTCACTTTTGGTTT
GTATTGATCTGTATGGGAAATCTGCGACCTGCAGAAGTGTTGTTTGACCA
TGTCTTGAAAGTATTTATGTGAACTAACTAATTATGGTGTTTATGTCATA
CGTACATTACAGATTAACTTTGGATATGGTAAATCCTGTTGGTGGTAAAT
CTGTCTGGAATTTGAAAATGAATTTTGTAATCTATACCTAGAGGAATGAA
AGATTGTAGTTAGTACAAAAAAAAAAA
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