EY659801

Overview
NameEY659801
Unique NameEY659801
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_VARPS (Glycogen synthase OS=Variovorax paradoxus (strain S110) GN=glgA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 2
Query:  128 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEETLLN-LEVAGS 505
            N  LAH +  G D  L+PS FEPCGL Q++ ++YG++P+V   GGL DTV +  T   M S        D  D A     +RRA A Y        +  N M +   W   A ++ E     LE AG+
Sbjct:  369 NETLAHQLFGGGDVTLVPSLFEPCGLTQMYGLKYGSLPLVRRVGGLADTVVD-CTLEDMASGHATGFVFDRFDAADYDRALRRAFALYQRAPDWRRVRGNAMRRPADWASAAGQYIEVYRQALESAGT 495          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_RHOBA (Glycogen synthase OS=Rhodopirellula baltica GN=glgA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 42/136 (30.88%), Postives = 68/136 (50.00%), Query Frame = 2
Query:   95 YPEKARGVSQLNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGMAQDLSWKGPAKKW 469
            +PE+       +  LAH I A +D  ++PS +EPCGL QL+++RYGT  +V  TGGL DT+ +           TGF +   S            A+   + RAL    +  +    +++ GM+QD +W+  A ++
Sbjct:  364 HPEQLAAYIGFSDALAHRIEASSDMFIMPSHYEPCGLNQLYSLRYGTPCVVTKTGGLADTIVDATPENVAANLATGFHLNDSS----------AGALDHAINRALQLRYHSPEKWKNLVEFGMSQDWTWRKSADQY 489          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_BORPD (Glycogen synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=glgA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 46/135 (34.07%), Postives = 63/135 (46.67%), Query Frame = 2
Query:  140 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT-VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAP 538
            AH + AGAD +L  SRFEP GL  L+AMRYG VPI +  GG+ DT V+ G         +      D      +   + RAL  Y   A+   M +NGMA +  W   A+ + +   N+  A     +    I P
Sbjct:  367 AHRLHAGADMLLHGSRFEPFGLTPLYAMRYGAVPIASRVGGMADTIVDPGEREGSQAMLAATGILFDGDGAPDMGHAIDRALRLYAQPAIWRSMQRNGMACEFGWNTAAQPYLDLFENMVDAPRRGRVPAPTIRP 501          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_PELPB (Glycogen synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 38/145 (26.21%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   56 KTFAQKGEQXEILYPEKARGVSQLNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 475
            K + +  +   + +PE+     + +    H+ IAG D +L+P   E CG+IQ+ AM YGT+P+  + GG+V+T+    EE  +GF    +S +          ++   +  ALA +   ++  +++   M +D +WK  A+++++
Sbjct:  347 KKYEKVFQDFALEHPEQVSVHGEYSDSFFHLAIAGLDILLMPGMIESCGMIQMFAMNYGTIPVAYAGGGIVETIEERDEESGSGFIFHDYSAE----------SLVGKLEEALACFHDEESWQQIVMTAMTRDFTWKKSAEEYDQ 481          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_CLOAB (Glycogen synthase OS=Clostridium acetobutylicum GN=glgA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 47/136 (34.56%), Postives = 67/136 (49.26%), Query Frame = 2
Query:   95 YPEKARGVSQLNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL--AEMMKNGMAQDLSWKGPAKKWEETLLNL 490
            YP K     Q N  LA  I   +D  L+PS+FEPCG+ QL A+RYG++PIV  TGGL DTV      TG   G    +  A D + V      +R A   Y  +     ++++  M  D SW   A+ +    +++
Sbjct:  347 YPNKLSANIQFNNSLAQKIYGASDMFLMPSKFEPCGIGQLIALRYGSLPIVRETGGLKDTVRPFNPITGEGNGFSFTNYNAHDMLHV------IRNAEYFYYNEKYNWNKLVQTAMNDDNSWSKSAEIYRNLYMSV 476          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_THEEB (Glycogen synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 2
Query:  137 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSW 448
            L+  I  GAD  ++PSRFEPCG+ Q+ A+RYG VPIV  TGGLVDTV       Q G+     +  +P+D     T + RA   Y   +    + + GM +D SW
Sbjct:  340 LSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGGLVDTVSHHNPEQQTGT-GYCFDRYEPLD---FYTCLVRAWEGYRYKREWHALQQRGMREDFSW 440          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_PELLD (Glycogen synthase OS=Pelodictyon luteolum (strain DSM 273) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 34/114 (29.82%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  143 HMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 469
            H+ IAG D +++  + E CG++Q+ AM YGT+P+  + GG+V+T++E    G +GF    ++ D          A+ + +  A+  Y  ++   E++   M +D +WKG A+++
Sbjct:  376 HLAIAGLDMLVMAGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIDEVSEGGGSGFIFREYTPD----------ALVSKLHEAIGLYHDSERWQELVMRAMTRDFAWKGAAEEY 479          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_LACCB (Glycogen synthase OS=Lactobacillus casei (strain BL23) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  137 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKW 469
            LA  I AGAD+ ++PS FEP GL Q+ AMRYGT+PIV  TGGL D+V      +   + + D  +    +   ++  +R A + Y  Q    A++ ++ M +D  W   A ++
Sbjct:  362 LAQRIYAGADYFMMPSAFEPSGLAQMMAMRYGTLPIVHETGGLRDSV----LAYNAETGAGDGFSFWDYNAGVLTNILRMAKSVYADQPKVYAKLQQHAMVKDFDWHHSAAEY 470          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_LACC3 (Glycogen synthase OS=Lactobacillus casei (strain ATCC 334) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  137 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKW 469
            LA  I AGAD+ ++PS FEP GL Q+ AMRYGT+PIV  TGGL D+V      +   + + D  +    +   ++  +R A + Y  Q    A++ ++ M +D  W   A ++
Sbjct:  362 LAQRIYAGADYFMMPSAFEPSGLAQMMAMRYGTLPIVHETGGLRDSV----LAYNAETGAGDGFSFWDYNAGVLTNILRMAKSVYADQPKVYAKLQQHAMVKDFDWHHSAAEY 470          
BLAST of EY659801 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 2
Query:  137 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKW 469
            LAH I AGAD  L+PSR+EPCGL Q++A+R+GT P+ +S GGL DT+        TGF            D V  A     + +A+  +     A A M++  M    +W+  A ++
Sbjct:  367 LAHRIQAGADIFLMPSRYEPCGLTQIYALRFGTPPVASSLGGLRDTITPWPAPDATGF----------TFDDVSPAGFLNAIMQAVNLWENDHTAWAGMVRRAMEVSFTWEKAAVQY 473          
The following BLAST results are available for this feature:
BLAST of EY659801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_VARPS7.990e-1235.94Glycogen synthase OS=Variovorax paradoxus (strain ... [more]
GLGA_RHOBA1.363e-1130.88Glycogen synthase OS=Rhodopirellula baltica GN=glg... [more]
GLGA_BORPD1.780e-1134.07Glycogen synthase OS=Bordetella petrii (strain ATC... [more]
GLGA_PELPB2.325e-1126.21Glycogen synthase OS=Pelodictyon phaeoclathratifor... [more]
GLGA_CLOAB3.036e-1134.56Glycogen synthase OS=Clostridium acetobutylicum GN... [more]
GLGA_THEEB3.965e-1140.95Glycogen synthase OS=Thermosynechococcus elongatus... [more]
GLGA_PELLD3.965e-1129.82Glycogen synthase OS=Pelodictyon luteolum (strain ... [more]
GLGA_LACCB3.965e-1135.40Glycogen synthase OS=Lactobacillus casei (strain B... [more]
GLGA_LACC33.965e-1135.40Glycogen synthase OS=Lactobacillus casei (strain A... [more]
GLGA_DESDG3.965e-1135.90Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659801 ID=EY659801; Name=EY659801; organism=Citrus sinensis; type=EST; length=847bp
CACTGGTACCCTGCTATACCGGTCCGGAATTCCTTTCAAAACACGCGCGT
CCGCAAAAACCTTTGCCCAAAAAGGGGAACAGNTGGAGATACTGTACCCT
GAGAAAGCCAGAGGAGTATCGCAACTCAATATTCCTCTGGCGCATATGAT
AATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTGAACCTTGTG
GTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCTATCGTGGCT
TCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAGGATTCCA
GATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTAGATGTGG
CTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGGTACTCAA
GCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTTCATGGAA
AGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAAGTTGCTG
GTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGCCAAGGAA
AATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTTTATTTTG
GACCGCAAACATGGTCCTGTAATTGCTCACAACCCAAGATATTACTTAGG
AAATACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCACTAATGGT
TTGGNAGTGAGACATTAGTGTTACCTTGGATAATGAAATATTAAGCTCTG
TTTACAGTTTTGTAAAAGGGCTCTGAAGGCTGTCGCACTCTCCTGAGATG
AAAAAGTTCACTGGACCAGTTATAAAAAAAAAAAAAAAAAAAAAAAA
back to top