EY659795 | Citrus Genome Database

Overview


Name	EY659795
Unique Name	EY659795
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	572

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK+   +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 TKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK+   +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 TKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK+   +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 TKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK+   +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 TKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_MOUSE (Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

[Close]

BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.429e-19
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2

Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAE-RVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            +K+VSRS +AGLQFPVGRI R LK    +  RVGA A                   GNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ KK
Sbjct:   15 AKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 122

The following BLAST results are available for this feature:

BLAST of EY659795 vs. ExPASy Swiss-Prot

BLAST of EY659795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239


Match Name	E-value	Identity	Description
H2AZ_MOUSE	5.688e-19	49.54	Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2	[more]
H2AZ_HUMAN	5.688e-19	49.54	Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2	[more]
H2AZ_CHICK	5.688e-19	49.54	Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3	[more]
H2AZ_BOVIN	5.688e-19	49.54	Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2	[more]
H2AV_XENTR	7.429e-19	49.54	Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ...	[more]
H2AV_XENLA	7.429e-19	49.54	Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3	[more]
H2AV_PAGMA	7.429e-19	49.54	Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3	[more]
H2AV_MOUSE	7.429e-19	49.54	Histone H2A.V OS=Mus musculus GN=H2afv PE=1 SV=3	[more]
H2AV_HUMAN	7.429e-19	49.54	Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3	[more]
H2AV_DANRE	7.429e-19	49.54	Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659795 ID=EY659795; Name=EY659795; organism=Citrus sinensis; type=EST; length=572bp
TTCAGTAGCGGACGCGTCCGCACCGATCTTCCTAAAAAAGGGACTTTCAA
TCGCTTCAAACCAAACCGAAATCTAAGGTTAGGTTTTCTCTGTAATAAGA
ATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAGCCGAAGGC
TTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTTCCCGGTGG
GCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGCGAGTCGGC
GCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTCGCTGCTGA
GGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAACAACCGTA
TAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGGAATTGAGC
AAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTACCCAACAT
TCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGGTGACATTG
GTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATTTTACTAGT
ATCTGTAAAAAAAAAAAAAAAA