EY659795

Overview
NameEY659795
Unique NameEY659795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.653e-32
Identity = 68/109 (62.39%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVG 481
            K VSRS KAGLQFPVGRI R+LK G+Y++R+G GAP                  GNAARDNK NRI+PRH+ LA+RNDEEL KLL  VTIA+GGVLPNI+  LLPKK G
Sbjct:   25 KPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTG 133          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.995e-32
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            KS SRS +AGLQFPVGRI R L+ G YAER+GAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQKSK 124          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 9.995e-32
Identity = 71/113 (62.83%), Postives = 79/113 (69.91%), Query Frame = 2
Query:  146 KASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 484
            + +KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNK +RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   10 QGTKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.995e-32
Identity = 72/120 (60.00%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQ 514
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK  K      S S+
Sbjct:   21 KSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATTTKSPSK 140          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.305e-31
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 2
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 128          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 68/111 (61.26%), Postives = 79/111 (71.17%), Query Frame = 2
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 484
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                  GNAARDNK +RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            KS +RS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 2
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQE 517
            +K+ +RS +AGLQFPVGR+ R L+ G YA RVGAGAP                  GNAARDNK +RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   13 AKAKTRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134          
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 69/111 (62.16%), Postives = 78/111 (70.27%), Query Frame = 2
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 484
            +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                  GNAARDNK  RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 AKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
The following BLAST results are available for this feature:
BLAST of EY659795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A4_ORYSI7.653e-3262.39Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A_SIPNU9.995e-3262.50Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_ACRFO9.995e-3262.83Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A1_MEDTR9.995e-3260.00Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A2_MEDTR1.305e-3164.49Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A_STRPU1.705e-3161.26Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_PLADU1.705e-3162.50Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAIMO1.705e-3161.06Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AX_XENLA1.705e-3157.38Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AL_STRPU1.705e-3162.16Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659795 ID=EY659795; Name=EY659795; organism=Citrus sinensis; type=EST; length=572bp
TTCAGTAGCGGACGCGTCCGCACCGATCTTCCTAAAAAAGGGACTTTCAA
TCGCTTCAAACCAAACCGAAATCTAAGGTTAGGTTTTCTCTGTAATAAGA
ATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAGCCGAAGGC
TTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTTCCCGGTGG
GCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGCGAGTCGGC
GCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTCGCTGCTGA
GGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAACAACCGTA
TAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGGAATTGAGC
AAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTACCCAACAT
TCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGGTGACATTG
GTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATTTTACTAGT
ATCTGTAAAAAAAAAAAAAAAA
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