EY659795

Overview
NameEY659795
Unique NameEY659795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 71/110 (64.55%), Postives = 76/110 (69.09%), Query Frame = 2 
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGK 484
            KS SRS +AGLQFPVGRI R L+ G YAERVGAGAP                  GNAARDNK  RIVPRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 KSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 75/131 (57.25%), Postives = 86/131 (65.65%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK----VGKGKGDIG----SASQEF 520
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    VG     +G     ASQE+
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSATVGPKAPAVGKKASQASQEY 143
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/107 (64.49%), Postives = 78/107 (72.90%), Query Frame = 2 
Query:  155 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 475
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                  GNAARDNK NRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   23 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A2C_MOUSE (Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHK 125
[Close]
BLAST of EY659795 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 69/113 (61.06%), Postives = 78/113 (69.03%), Query Frame = 2 
Query:  152 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGK 490
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNK  RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHK 125
The following BLAST results are available for this feature:
BLAST of EY659795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_LITVA2.227e-3164.55Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2AX_MOUSE2.227e-3157.25Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AJ_MACFA2.227e-3161.06Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN2.227e-3161.06Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_CHICK2.227e-3161.06Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1[more]
H2AJ_BOVIN2.227e-3161.06Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A3_MEDTR2.227e-3164.49Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A2C_MOUSE2.227e-3161.06Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac ... [more]
H2A2C_HUMAN2.227e-3161.06Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ... [more]
H2A2C_BOVIN2.227e-3161.06Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659795 ID=EY659795; Name=EY659795; organism=Citrus sinensis; type=EST; length=572bp
TTCAGTAGCGGACGCGTCCGCACCGATCTTCCTAAAAAAGGGACTTTCAA
TCGCTTCAAACCAAACCGAAATCTAAGGTTAGGTTTTCTCTGTAATAAGA
ATGAGTTCAACTGGAGGGTCAACGAAGGGCGGCAGGGGTAAGCCGAAGGC
TTCGAAATCGGTCTCGCGGTCGCATAAGGCGGGCCTTCAGTTCCCGGTGG
GCAGGATCGCTAGGTTTTTGAAGGCCGGAAAGTACGCTGAGCGAGTCGGC
GCCGGAGCTCCTGTTTACCTCTCTGCCGTGCTTGAGTACCTCGCTGCTGA
GGTTCTGGAGCTTGCTGGCAATGCAGCAAGGGACAACAAGAACAACCGTA
TAGTGCCAAGGCATATTCAGCTTGCAGTTCGAAATGATGAGGAATTGAGC
AAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTGTTTTACCCAACAT
TCACCAGACGCTGCTTCCCAAGAAGGTGGGGAAAGGAAAGGGTGACATTG
GTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCAGAATTTTACTAGT
ATCTGTAAAAAAAAAAAAAAAA
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