EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CLOD6 (30S ribosomal protein S5 OS=Clostridium difficile (strain 630) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 56/150 (37.33%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL--LKT 799
            L+++V++   V K  + G+  RF A VVVGD +GHVG+G   + EV  AI+ A+  AK  L V+P+        +G   T+P +V G  G+  + ++PA  G G++A   ++ VL+ AG+ DV   S GS     N V A  E L  LKT
Sbjct:   14 LQEKVVEVRRVTKVVKGGRNFRFAALVVVGDENGHVGIGAGKAMEVPDAIKKAVEDAKKNLIVVPI--------VGT--TIPHEVRGHFGAGNILIMPAVEGTGVIAGGPARAVLELAGLKDVRAKSLGSNNP-RNMVNATIEGLNSLKT 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CHLL2 (30S ribosomal protein S5 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            LK++++      K  + G+R  F A VVVGD +GHVG G+  + EV  AI   +   K +VI  P+ +G          T+P +V  K GS  V M PA  G G++A    + VL+ AG+ DV T S GS+    N VKA
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDREGHVGYGLGKANEVQDAIAKGVEDGKKNVIKVPIVKG----------TIPHQVIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVHDVLTKSLGSSNP-HNVVKA 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 139          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 139          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACCR (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 140          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACC1 (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 10987) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 139          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACAN (30S ribosomal protein S5 OS=Bacillus anthracis GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   10 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 139          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACAH (30S ribosomal protein S5 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.467e-14
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  + G  G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAV------PLVGT--TIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPI-NMIRA 140          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STRSY (30S ribosomal protein S5 OS=Streptococcus suis (strain 05ZYH33) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AIR A+  AK ++I V        +G   T+P +V  + G   V + PA  G+G+ A   ++ V++ AGI DV + S GS   + N V+A  E L
Sbjct:    9 EIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVESAKKNMIEV------PMVGT--TIPHEVRSEFGGARVLLKPASEGSGVAAGGATRAVIELAGIADVTSKSLGSNTPI-NIVRATVEGL 143          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STRS2 (30S ribosomal protein S5 OS=Streptococcus suis (strain 98HAH33) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AIR A+  AK ++I V        +G   T+P +V  + G   V + PA  G+G+ A   ++ V++ AGI DV + S GS   + N V+A  E L
Sbjct:    9 EIEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVESAKKNMIEV------PMVGT--TIPHEVRSEFGGARVLLKPASEGSGVAAGGATRAVIELAGIADVTSKSLGSNTPI-NIVRATVEGL 143          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_CLOD63.467e-1437.3330S ribosomal protein S5 OS=Clostridium difficile ... [more]
RS5_CHLL23.467e-1437.8630S ribosomal protein S5 OS=Chlorobium limicola (s... [more]
RS5_BACHK3.467e-1436.6930S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_BACCZ3.467e-1436.6930S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACCR3.467e-1436.6930S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACC13.467e-1436.6930S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACAN3.467e-1436.6930S ribosomal protein S5 OS=Bacillus anthracis GN=... [more]
RS5_BACAH3.467e-1436.6930S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_STRSY4.528e-1436.1130S ribosomal protein S5 OS=Streptococcus suis (st... [more]
RS5_STRS24.528e-1436.1130S ribosomal protein S5 OS=Streptococcus suis (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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