EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURP8 (30S ribosomal protein S5 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURP6 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 668) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURP1 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURP0 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURMS (30S ribosomal protein S5 OS=Burkholderia mallei (strain SAVP1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURMA (30S ribosomal protein S5 OS=Burkholderia mallei GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURM9 (30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURM7 (30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURM1 (30S ribosomal protein S5 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG VG+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+ TV + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BEUC1 (30S ribosomal protein S5 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 50/133 (37.59%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            V K  + G+R  F A VVVGD DG VG+G   +KEV TAI   +  AK +   V R           T+P  V G+  +  V + PA  G G++A    + VL  AGI DV + S GS+  + N V A    L
Sbjct:   58 VAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPTAIAKGVEEAKKNFFRVPR--------IQGTIPHSVRGEAAAGVVFLRPASPGTGVIAGGPVRAVLDCAGIHDVLSKSLGSSNAI-NIVHATVAAL 181          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_BURP82.103e-1131.9730S ribosomal protein S5 OS=Burkholderia phymatum ... [more]
RS5_BURP62.103e-1131.9730S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURP12.103e-1131.9730S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURP02.103e-1131.9730S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURMS2.103e-1131.9730S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURMA2.103e-1131.9730S ribosomal protein S5 OS=Burkholderia mallei GN... [more]
RS5_BURM92.103e-1131.9730S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURM72.103e-1131.9730S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURM12.103e-1131.9730S ribosomal protein S5 OS=Burkholderia multivora... [more]
RS5_BEUC12.103e-1137.5930S ribosomal protein S5 OS=Beutenbergia cavernae ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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