EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.704e-42
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGF 808
            W P T+LGR+V+EGKIR++++I+ ++  IKE +I+D L+   LK E++    VQ+QT AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PVRRG   W      PH+VP  V GK GSV + ++PAP+G G+VA  V+K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:   25 WEPRTELGRMVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAPKGVGLVAGDVAKAVLRLAGIKDVWTKTRGDTRTTLNFAMAVYNALRNTYYF 216          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.704e-42
Identity = 93/204 (45.59%), Postives = 133/204 (65.20%), Query Frame = 2
Query:  227 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRE 832
            +E+W+P T+LG+LV EG++ S+E+     LPI+E QIID L+   L+DEV+    VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  + RG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A   + KVL+ AGI DV+T + G+T++  NF KA F+ L +      P + +E
Sbjct:    4 DEEWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQVNVMRLPVYCKE 206          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_ARCFU (30S ribosomal protein S5P OS=Archaeoglobus fulgidus GN=rps5p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.548e-41
Identity = 87/192 (45.31%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            E WVP TKLGRLV +GKI+++++    +LP+KE +I+D L+   L+D+V++   VQ+ T +G+RT+F+   VVG+ +G+VG+G   + +V+ AI+ AI  AKL++  V+RG   W    G  H++P KVTG  GSV V ++P P+G GIVA  V+K+V++ AG+ DV++ ++G TKT  NF KA +E L KT
Sbjct:    3 EDWVPKTKLGRLVADGKIKTMDEALASNLPLKEPEIVDILLPD-LEDDVLEISMVQRMTDSGRRTKFRVTAVVGNRNGYVGIGTGKASQVAPAIQKAINNAKLNIFKVQRGCGSWECGCGGDHSLPFKVTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAKATYEALKKT 193          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.345e-41
Identity = 95/204 (46.57%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  221 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFW 826
            E  E WVP T++G++V EGKI SL++I+  +LP+ E +I+D L+   LK E +    VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG   W  + G PH++P  V GK GSV V + PAP+G G+VA   +K VL+ AGI DV+T + G TKT  NF KA    L  TY F+ P  W
Sbjct:    9 EALETWVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.675e-41
Identity = 90/190 (47.37%), Postives = 129/190 (67.89%), Query Frame = 2
Query:  227 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++ WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+    VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A   + KVL+ AGI DV+T + G+T++  NF KA ++ L
Sbjct:    4 DQDWVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.675e-41
Identity = 90/190 (47.37%), Postives = 129/190 (67.89%), Query Frame = 2
Query:  227 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++ WVP T+LG+LV EG++ S+++     LPI+E QIID L+   L+DEV+    VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A   + KVL+ AGI DV+T + G+T++  NF KA ++ L
Sbjct:    4 DQDWVPKTRLGKLVVEGQVASMDEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATYDAL 192          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.412e-41
Identity = 87/201 (43.28%), Postives = 133/201 (66.17%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFW 826
            E W P TK+G+L++EGKI S+++++  +LPI E +I+D L+  KL+ +++    VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG   W    G  H++P  V+GK GSV V ++PAP+G G+V   V K  L  AG+ DV++ ++GST T  NF+KA +  L  TY F+TP  W
Sbjct:   11 EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDW 210          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.264e-40
Identity = 91/207 (43.96%), Postives = 133/207 (64.25%), Query Frame = 2
Query:  221 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRET 835
            E  E+WVP T+LG+LV +G++ S+++     LPI+E +I+D L+  +L+DEV+    VQ+ T +G+R +F+A V+VG+ DG VGLG     +V  AIR AI  AK+++  ++RG   W    G PHTVP +V GK GSVTV + PAPRG G+ A   ++KVL+ AG+ DV+T + G T+T  NF KA +  L+ T     P  + ET
Sbjct:    4 EYNEEWVPQTRLGKLVFDGQVTSMDEAMDSGLPIRESKIVDLLLP-ELEDEVLDINMVQRMTDSGRRVKFRATVIVGNGDGFVGLGQAKDVQVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLEKAGVKDVWTRTEGQTRTTLNFAKATYNALMNTGTVRRPIVFDET 209          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.651e-40
Identity = 88/189 (46.56%), Postives = 126/189 (66.67%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            E+W P T+LGRLV+EG I S+++I+    PI E +IID L+   L++EV+    VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++ AGIDDV++ +RG T+T  NF +A F+ L
Sbjct:    8 EEWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDAL 195          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.183e-38
Identity = 86/193 (44.56%), Postives = 125/193 (64.77%), Query Frame = 2
Query:  227 EEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            +E+W+P+T LGR+V  G+I S++++     PIKE QI+D L+   L+DEV+    VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V RG   W       H++P +VTGK GSV V + PAP+G G+V   + KKVL  AGI DV+  +RG T+T  N+ KA FE L +T
Sbjct:    5 QEEWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAKATFEALKQT 196          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_PYRAE6.704e-4246.6330S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]
RS5_METBF6.704e-4245.5930S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_ARCFU2.548e-4145.3130S ribosomal protein S5P OS=Archaeoglobus fulgidu... [more]
RS5_STAMF4.345e-4146.5730S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_METMA5.675e-4147.3730S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METAC5.675e-4147.3730S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_SULAC7.412e-4143.2830S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_METBU1.264e-4043.9630S ribosomal protein S5P OS=Methanococcoides burt... [more]
RS5_METTH1.651e-4046.5630S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METMJ1.183e-3844.5630S ribosomal protein S5P OS=Methanoculleus marisn... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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