EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_AYWBP (30S ribosomal protein S5 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVA-ARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            L+++V+K   + K  + G R RF A VVVGD  G +G     +KE+  AI+ A+  AK  ++ +        +G   T+P    G+ G+    + PA +G GIVA  + ++ +L+  GI+DV T + GS +T  N ++A
Sbjct:   29 LEEKVVKINRITKVVKGGARFRFSALVVVGDKKGQIGFATAKAKEIVEAIKKALEKAKKQLVRI------PIVGT--TIPHDTIGRFGASKFFLKPASKGTGIVAGGKAARTILELVGINDVLTKTFGS-RTSINVIRA 158          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:  341 DTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGN 763
            D L   K  + ++K   V K T+ G++  F+A VV+GD +G VG+GV  +++V  A + A    + ++I V        I +  ++P  V G  G+  + M P+  G+G++A    + VL+ AGI +V     GS   L N
Sbjct:   19 DNLNEAKFVERLIKISRVTKVTKGGKKLSFRAVVVIGDENGKVGVGVGKAEDVVNAFKKAKTDGRKNLIDV-------PITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNN 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_ZYMMO (30S ribosomal protein S5 OS=Zymomonas mobilis GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G +L ++++    V K  + G+R  F A VVVGD  G VG G   ++EV  AI  A   AK ++I  P+R G   +  GR         G+ G+  V +  AP G GI+A    + + +  G+ DV T S G++    N ++A FE L
Sbjct:   56 GEELIEKLVHINRVSKTVKGGKRFGFAALVVVGDGKGRVGFGHGKAREVPEAISKATAAAKKTMIRVPLREGRTLHHDGR---------GRFGAGLVYLRSAPSGTGIIAGGPMRAIFESLGVADVVTKSVGTSNPY-NMIRATFEAL 193          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_TROWT (30S ribosomal protein S5 OS=Tropheryma whipplei (strain Twist) GN=rpsE PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + V++   V K  + G++  F A VVVGD DG VG+G   ++EV  AI   I  A+ +   V R           T+P  V G+  S  V + PA  G G++A    + VL+ AG+ DV + S GS+ ++ N V A  + L
Sbjct:   55 ERVVRINRVAKVVKGGRKFSFSALVVVGDGDGTVGVGYGKAREVPLAISKGIESARKNFFTVPR--------VASTIPHPVQGEAASGVVLLRPAAPGTGVIAGGPVRAVLECAGVRDVLSKSLGSSNSI-NVVYATLDAL 186          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_TROW8 (30S ribosomal protein S5 OS=Tropheryma whipplei (strain TW08/27) GN=rpsE PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + V++   V K  + G++  F A VVVGD DG VG+G   ++EV  AI   I  A+ +   V R           T+P  V G+  S  V + PA  G G++A    + VL+ AG+ DV + S GS+ ++ N V A  + L
Sbjct:   55 ERVVRINRVAKVVKGGRKFSFSALVVVGDGDGTVGVGYGKAREVPLAISKGIESARKNFFTVPR--------VASTIPHPVQGEAASGVVLLRPAAPGTGVIAGGPVRAVLECAGVRDVLSKSLGSSNSI-NVVYATLDAL 186          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SYNFM (30S ribosomal protein S5 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 48/146 (32.88%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L D+V+    V K  + G+R  F A VVVGD +G VG  +  + EV  AIR  +  AK ++  +P+             T+P +V G+ G+ +V + PA  G G++A    + +++ AGI ++ T   GS +   N VKA  E L
Sbjct:   10 QLIDKVVHISRVAKVVKGGRRFSFSAIVVVGDGNGRVGFSLGKANEVPEAIRKGMESAKRTMFEVPLVNA----------TIPHEVLGRFGAASVVLKPASAGTGVIAGGAVRAIMEAAGIHNILTKCIGS-RNPHNVVKATLEGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STRGG (30S ribosomal protein S5 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            V K  + G+R  F A VVVGD DG VG+G   +KEV  AI   +  AK +   V R           T+P  +TG+  +  V + PA  G G++A    + VL+ AG+ D+ + S GS+  + N V A    L
Sbjct:   44 VAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKNFFKVPR--------IQGTIPHPITGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDILSKSLGSSNAI-NIVHATVAAL 167          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_RHOPB (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            D+++    V K  + G+R  F A VV+GD  G VG G   ++EV  AIR A   AK  L+ +P+R G          T+   + G+ G+  V +  AP G GI+A    + V +  GI DV   S GS+    N V+A F+ L
Sbjct:   24 DKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGFGHGKAREVPEAIRKATESAKRNLTRVPLREG---------RTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSIGSSNPY-NMVRATFDAL 156          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_RHOP5 (30S ribosomal protein S5 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            D+++    V K  + G+R  F A VV+GD  G VG G   ++EV  AIR A   AK  L+ +P+R G          T+   + G+ G+  V +  AP G GI+A    + V +  GI DV   S GS+    N V+A F+ L
Sbjct:   24 DKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGFGHGKAREVPEAIRKATESAKRNLTRVPLREG---------RTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSIGSSNPY-NMVRATFDAL 156          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_NITWN (30S ribosomal protein S5 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            D+++    V K  + G+R  F A VV+GD  G VG G   ++EV  AIR A   AK  L+ +P+R G          T+   + G+ G+  V +  AP G GI+A    + V +  GI DV   S GS+    N V+A F+ L
Sbjct:   25 DKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGFGHGKAREVPEAIRKATESAKRNLTRVPLREG---------RTLHHDIAGRHGAGRVYLRAAPAGTGIIAGGPMRAVFETLGIQDVVAKSVGSSNPY-NMVRATFDAL 157          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_AYWBP2.103e-1133.0930S ribosomal protein S5 OS=Aster yellows witches'... [more]
RR5_THAPS2.103e-1131.2130S ribosomal protein S5, chloroplastic OS=Thalass... [more]
RS5_ZYMMO2.747e-1133.7830S ribosomal protein S5 OS=Zymomonas mobilis GN=r... [more]
RS5_TROWT2.747e-1134.0430S ribosomal protein S5 OS=Tropheryma whipplei (s... [more]
RS5_TROW82.747e-1134.0430S ribosomal protein S5 OS=Tropheryma whipplei (s... [more]
RS5_SYNFM2.747e-1132.8830S ribosomal protein S5 OS=Syntrophobacter fumaro... [more]
RS5_STRGG2.747e-1135.3430S ribosomal protein S5 OS=Streptomyces griseus s... [more]
RS5_RHOPB2.747e-1134.9730S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_RHOP52.747e-1134.9730S ribosomal protein S5 OS=Rhodopseudomonas palus... [more]
RS5_NITWN2.747e-1134.9730S ribosomal protein S5 OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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