EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_THEAB (30S ribosomal protein S5 OS=Thermosipho africanus (strain TCF52B) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  365 KDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGST 748
            ++ +++     K T+ G+   F+   VVG+ +G VG+GV  ++EV  AIR A+  A+ +V  +P+  G          T+P ++ G+  +  V + PA  G GI++    + V++ AGI ++ T + GST
Sbjct:   16 EERIVEIRRTTKVTKGGKNLSFRVLAVVGNRNGKVGVGVGKAREVPDAIRKALSAARRNVFEVPIYNG----------TIPHEIVGRQDAAKVLLKPAAPGTGIISNGTVRAVVELAGIHNILTKTSGST 135          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STRCO (30S ribosomal protein S5 OS=Streptomyces coelicolor GN=rpsE PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 49/133 (36.84%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            V K  + G+R  F A VVVGD DG VG+G   +KEV  AI   +  AK     V R           T+P  + G+  +  V + PA  G G++A    + VL+ AGI DV + S GS   + N V A  E L
Sbjct:   44 VAKVVKGGRRFSFTALVVVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKHFFKVPR--------IQGTIPHPIQGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGIHDVLSKSLGSDNQI-NIVHATVEAL 167          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SILPO (30S ribosomal protein S5 OS=Silicibacter pomeroyi GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 49/143 (34.27%), Postives = 69/143 (48.25%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            D ++    V K  + G+R  F A VVVGD  G VG G   +KEV  AIR A   AK  +I V       ++    T+   + G+ G+  V M  AP G GI+A    + V +  G+ DV + S GS     N ++A  + L K
Sbjct:   23 DRLVAINRVSKTVKGGKRFGFAALVVVGDQKGRVGFGKGKAKEVPEAIRKATEQAKRQMIRV-------QLREGRTLHHDIEGRHGAGKVVMRAAPEGTGIIAGGPMRAVFEMLGVKDVVSKSLGSANPY-NMIRATIDGLKK 157          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SALTO (30S ribosomal protein S5 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 49/133 (36.84%), Postives = 68/133 (51.13%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            V K  + G+R  F A V+VGD DG VG+G   +KEV  AI   +  AK     V R      IG+  ++P  V G+  +  V + PA  G G++A    + VL+ AGI DV + S GS+  + N V A    L
Sbjct:   47 VAKVVKGGRRFSFTALVIVGDGDGTVGVGYGKAKEVPAAIAKGVEEAKKHFFKVPR------IGQ--SIPHPVQGEDAAGVVLLKPASAGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNPI-NIVHATLAAL 170          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METS4 (30S ribosomal protein S5 OS=Methylobacterium sp. (strain 4-46) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  368 DEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            D ++    V K  + G+R  F A VVVGD  G VG G   ++EV  AIR A   AK  +I V        +    T+   V G+ GS  V +  AP+G GI+A    + V +  G+ DV   S GS+    N ++A F+ L
Sbjct:   22 DRLVHINRVAKVVKGGRRFGFAALVVVGDQKGRVGFGHGKAREVPEAIRKATEAAKRGLIRV-------ALREGRTLHHDVAGRHGSGKVILRAAPQGTGIIAGGPMRAVFESVGMQDVVAKSLGSSNPY-NLIRATFDAL 154          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GLUDA (30S ribosomal protein S5 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G  L D+++    V K  + G+R  F A VVVGD  G VG G   ++EV  AIR A   AK ++I  P++ G          T+   V G  G+  V +  A  G GI+A    + V +  GI+DV   S G T+   N VKA F  L
Sbjct:   19 GDDLVDKLVTINRVAKVVKGGRRFAFAALVVVGDQKGRVGYGAGKAREVPEAIRKATDRAKRAMIRVPMKEG---------RTLHHDVAGHFGAGKVVLRSADAGTGIIAGGPMRAVFESLGINDVVAKSLG-TRNPHNMVKATFAAL 156          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_DEIGD (30S ribosomal protein S5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  398 KQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            K  + G+R RF A V++GD +G VG+G+  +KEV  AI  A  +A+ ++I  PV  G          T+P ++ G+  +  V + PA  G G++A  V + + + AGI ++ +   GS   + N   A F+ L
Sbjct:   28 KTYQGGRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAIARKNMITVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELGSRNKI-NVAYAVFDGL 149          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_DEHE1 (30S ribosomal protein S5 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            +L D+++    V K  + G+R  F A VV GD   HVG+GV  +KEV +AI  A   AK ++  +        +    TVP ++  K G+  V + PA  G GI+A    + VL+  GI D+ T S G +    N  KA
Sbjct:   14 ELNDKLIFINRVTKVVKGGKRMGFAALVVTGDGKNHVGIGVGKAKEVPSAISKASANAKRNLSRI--------LLNGTTVPHEIVFKYGAAQVLLKPAAPGTGIIAGGSVRAVLESTGIKDILTKSMGCSNK-ANVAKA 143          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CAMJR (30S ribosomal protein S5 OS=Campylobacter jejuni (strain RM1221) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYG 805
            V K  + G+R RF A V+VG+  G VG+G   +KEV  AIR A+  A  +++ V+         +  T+   V  K  +  + + PA  G G++A   ++ +++ AGI D+ T S GS  +  N V+A  + L    G
Sbjct:   19 VTKVVKGGRRFRFTALVIVGNRKGLVGVGYGKAKEVPDAIRKAVDDAFKNIVEVKT--------KGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNS-ANVVRATIKALTMLKG 147          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CAMJJ (30S ribosomal protein S5 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  392 VQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYG 805
            V K  + G+R RF A V+VG+  G VG+G   +KEV  AIR A+  A  +++ V+         +  T+   V  K  +  + + PA  G G++A   ++ +++ AGI D+ T S GS  +  N V+A  + L    G
Sbjct:   19 VTKVVKGGRRFRFTALVIVGNRKGLVGVGYGKAKEVPDAIRKAVDDAFKNIVEVKT--------KGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNS-ANVVRATIKALTMLKG 147          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_THEAB6.120e-1130.0030S ribosomal protein S5 OS=Thermosipho africanus ... [more]
RS5_STRCO6.120e-1136.8430S ribosomal protein S5 OS=Streptomyces coelicolo... [more]
RS5_SILPO6.120e-1134.2730S ribosomal protein S5 OS=Silicibacter pomeroyi ... [more]
RS5_SALTO6.120e-1136.8430S ribosomal protein S5 OS=Salinispora tropica (s... [more]
RS5_METS46.120e-1134.7530S ribosomal protein S5 OS=Methylobacterium sp. (... [more]
RS5_GLUDA6.120e-1135.8130S ribosomal protein S5 OS=Gluconacetobacter diaz... [more]
RS5_DEIGD6.120e-1132.3330S ribosomal protein S5 OS=Deinococcus geothermal... [more]
RS5_DEHE16.120e-1134.5330S ribosomal protein S5 OS=Dehalococcoides etheno... [more]
RS5_CAMJR6.120e-1131.8830S ribosomal protein S5 OS=Campylobacter jejuni (... [more]
RS5_CAMJJ6.120e-1131.8830S ribosomal protein S5 OS=Campylobacter jejuni s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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