EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.183e-38
Identity = 83/194 (42.78%), Postives = 125/194 (64.43%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            ++ +WVP+T LGR+V+ G+I+S+++I     PIKE +I+D  +   L DEV+    VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VRRG   W      PH++P  VTG  GSV V + PAP+G G+V   + KKVL+ AGI DV+  ++G T+T  N+ KA F  L  T
Sbjct:    4 DKSEWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKKVLELAGIRDVWAQTQGQTRTTINYAKATFNALKAT 196          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.019e-38
Identity = 85/189 (44.97%), Postives = 126/189 (66.67%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++W P T +GR+V+EG+I  ++ I  ++LPI E +I+D L+   L+++V+    VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V+K VL  AGI DV+T + G T+T  NF  A FE L
Sbjct:    6 DEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEAL 193          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.636e-38
Identity = 85/195 (43.59%), Postives = 120/195 (61.54%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            ++W P TKLG +V+EG+I  + +I+     IKE +IID L   +  +   EV+      + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+ AG+ DV++ + G T+T  NF KA F  L  T
Sbjct:   14 DEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNT 208          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.636e-38
Identity = 85/189 (44.97%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++W P TK+G+LV+EG I  +++I+   LPI E +I+D L+   L++EVM    VQ+  ++G++  F+  V VG+ +G+VGLG   +KEV  AIR A+  AK ++I VRRG   WG   G+ HTVP KV GK  SV+V ++PAP G G+V   V K +L  AGI DV++ S G T+T  NF  A F+ L
Sbjct:    6 DEWEPKTKMGKLVKEGTITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDVGKTILNLAGIKDVWSQSFGQTQTTVNFANAIFDAL 193          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.497e-38
Identity = 87/194 (44.85%), Postives = 124/194 (63.92%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            E+  W+P T+LG++V EGKI ++E+ +   LPIKEYQI+D L+   L DEV+    VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAPRG G+ A   +KKVL+ AG  DV++ + G T+T  NF  A ++ L  T
Sbjct:    8 EQAAWIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.497e-38
Identity = 84/192 (43.75%), Postives = 124/192 (64.58%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            E+WVP T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + LKDEV+     Q+ T +G+R  +   VVVG+ DG+VGLG+  SKE + AIR A+I AKL+++ +RRG   W    GR HT+P  V GK GSV + + PAPRG G+    V++ +L  AGI+D +  + G TKT  N+  A +  L +T
Sbjct:    3 EEWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.497e-38
Identity = 86/189 (45.50%), Postives = 122/189 (64.55%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            E W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+    VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V+K VL  AGI D +T + G T+T  NF +A F+ L
Sbjct:   18 EAWEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.497e-38
Identity = 87/194 (44.85%), Postives = 123/194 (63.40%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            E+E WVPVT LG+ V  G+  S ++I     PIKE  I+D ++   L DEV+    +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VRRG   W    G  H+VP +VTGK GSV V + PAP+G G+V   V KKVL  AGI DV+ ++ G+T+T  NF KA +  L +T
Sbjct:    4 EQEVWVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNFAKATYNALRET 196          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.873e-38
Identity = 85/195 (43.59%), Postives = 120/195 (61.54%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            ++W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++      + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+ AGI DV++ + G T+T  NF KA F  L  T
Sbjct:   14 DEWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAKAVFNALYNT 208          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.873e-38
Identity = 84/189 (44.44%), Postives = 123/189 (65.08%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+    VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V+K VL  AG+ D +T++ G T+T  NF +A F+ L
Sbjct:   14 DSWEPKTQVGRMVKEGTISDISYIMDKGLPLLEPEIVDVLLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAEATFDAL 201          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_METHJ1.183e-3842.7830S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_METJA2.019e-3844.9730S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_PYRFU2.636e-3843.5930S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_METS32.636e-3844.9730S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_UNCMA4.497e-3844.8530S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_THEAC4.497e-3843.7530S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_METM64.497e-3845.5030S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METLZ4.497e-3844.8530S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_PYRHO5.873e-3843.5930S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_METVS5.873e-3844.4430S ribosomal protein S5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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