EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A   ++ VL+ AGI D+ + S GS   + N V+A F+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_FLAPJ (30S ribosomal protein S5 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 55/148 (37.16%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            G +LKD ++    V K T+ G+   F A VVVGD +G VG G+  SK+VS AI  A+  AK +++ +             +VP +  GK G   V ++PA  G G++A    + VL+  GI DV + S+GS+    N VKA F+ LL+
Sbjct:   15 GLELKDRLVSVNRVTKVTKGGRAFGFSAIVVVGDENGVVGHGLGKSKDVSEAIAKAVEDAKKNLVKIPLS--------GKSVPHEQKGKFGGARVNLMPASHGTGVIAGGAVRSVLESVGIHDVLSKSQGSSNP-HNVVKATFDALLQ 153          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACST (30S ribosomal protein S5 OS=Bacillus stearothermophilus GN=rpsE PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A   ++ VL+ AGI D+ + S GS   + N V+A F+ L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G+  + + PA  G G++A   ++ VL+ AGI D+ + S GS   + N V+A F+ L
Sbjct:   10 ELEERVVAINRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_AQUAE (30S ribosomal protein S5 OS=Aquifex aeolicus GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.408e-15
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 2
Query:  323 KEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            K+  I + L   +L++ ++ +    + T+ G+R  F   VVVGD  GHVG G   +KEV+ AI   I  AK +VI  P+  G          TVP  V G  G+  + ++PA RG G+VA   +K V + AG  DV T   GST    N V+A F+ LL+
Sbjct:   15 KQQNIEEILPELQLEERLIYANRTARVTKGGRRFSFSTLVVVGDRKGHVGFGHGKAKEVTLAIAKGIEKAKKNVIRVPIVDG----------TVPHDVIGTFGATKIIVLPARRGTGVVAGGAAKPVFELAGYTDVLTKIIGSTNP-DNVVRAVFDALLQ 163          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_UREU1 (30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  365 KDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTP 817
            ++ V+K   + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++A    LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_UREPA (30S ribosomal protein S5 OS=Ureaplasma parvum GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  365 KDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTP 817
            ++ V+K   + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++A    LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_UREP2 (30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.838e-15
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 2
Query:  365 KDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTP 817
            ++ V+K   + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++   V G+ G+  V ++PAP G GI+A    + V++ AG  D++T SRG+   + N ++A    LL+    LTP
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATINGLLQQ---LTP 189          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.401e-15
Identity = 44/145 (30.34%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  356 HKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            ++ +++++K   V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P ++ GK G+ T+ M PA  G G++A   S+++L+  G+ D+ T  +GS +   N  +A  E L
Sbjct:    7 NQYQEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDILTKIKGS-RNKHNVARATVEAL 142          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.136e-15
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            LK++V+    V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A   ++ VL+ AG+ DV   S GS     N VKA    L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_GEOKA6.319e-1638.1930S ribosomal protein S5 OS=Geobacillus kaustophil... [more]
RS5_FLAPJ6.319e-1637.1630S ribosomal protein S5 OS=Flavobacterium psychro... [more]
RS5_BACST6.319e-1638.1930S ribosomal protein S5 OS=Bacillus stearothermop... [more]
RS5_GEOTN1.408e-1537.5030S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_AQUAE1.408e-1536.8830S ribosomal protein S5 OS=Aquifex aeolicus GN=rp... [more]
RS5_UREU11.838e-1535.1030S ribosomal protein S5 OS=Ureaplasma urealyticum... [more]
RS5_UREPA1.838e-1535.1030S ribosomal protein S5 OS=Ureaplasma parvum GN=r... [more]
RS5_UREP21.838e-1535.1030S ribosomal protein S5 OS=Ureaplasma parvum sero... [more]
RS5_FUSNN2.401e-1530.3430S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_CLOPS3.136e-1538.4630S ribosomal protein S5 OS=Clostridium perfringen... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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