EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.136e-15
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            LK++V+    V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A   ++ VL+ AG+ DV   S GS     N VKA    L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.136e-15
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            LK++V+    V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP ++ GK G+  V ++PA  G G++A   ++ VL+ AG+ DV   S GS     N VKA    L
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATINGL 143          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.096e-15
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A   ++ VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATVDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_LEUMM (30S ribosomal protein S5 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.349e-15
Identity = 53/144 (36.81%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD  GHVG G   ++EV  AIR AI  AK  +I V             T+P  V G+ G   + + PA  G+G+ A   ++ V++ AGI DV   S GS   + N ++A F+ L
Sbjct:   12 ELEENVVAINRVTKVVKGGRRLRFAALVVVGDKQGHVGFGTGKAQEVPEAIRKAIEDAKRKLITVPT--------VSTTIPHDVLGEWGGGKILVKPAEEGSGVAAGGAARSVMELAGIADVTAKSLGSATPI-NVIRATFDAL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_ANOFW (30S ribosomal protein S5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.349e-15
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A   ++ VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLITV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATIDGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_OENOB (30S ribosomal protein S5 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            L++ V+    V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK  +I V        +G   T+P +V G  G   V + PA  G+G+ A   ++ +++ AGI DV   S GS+ T  N V+A F+ L
Sbjct:   13 LEENVVSINRVTKVVKGGRRLRFSALVIVGDRNGHVGFGTGKAQEVPEAIRKAVEDAKRHLIKV------PTVGT--TIPHQVLGVDGGGKVLLKPASEGSGVAAGGSTRPIMELAGIPDVTAKSLGSS-TAVNVVRATFDGL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_LACPL (30S ribosomal protein S5 OS=Lactobacillus plantarum GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 57/148 (38.51%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL--LKT 799
            L D V+    + K  + G+R RF A V+VGD  GHVG G   ++EV  AIR A   AK ++I V        +G   T+P +  G  G   + + PA  G+G+ A    + V++ AG+DDV TS R  + T  N V+A FE L  LKT
Sbjct:   11 LDDNVVAINRITKVVKGGRRLRFAALVIVGDHKGHVGFGTGKAQEVPEAIRKASEAAKKNLITV------PMVGT--TIPHEALGVYGGGRIMLKPAVEGSGVAAGGAVRAVMELAGVDDV-TSKRLGSNTPVNVVRATFEGLKSLKT 149          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_LACBA (30S ribosomal protein S5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L+D V+    + K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  A+ ++I V        +G   T+P +V G  G   + + PA  G+G+ A    + V++ AG+ DV TS R  + T  N V+A F+ L
Sbjct:   11 ELEDNVVAINRITKVVKGGRRLRFAALVIVGDKNGHVGFGTGKAQEVPEAIRKAVEAARKNLIEV------PIVGT--TIPHEVLGTFGGGKIMLKPAAEGSGVTAGGAVRSVMELAGVADV-TSKRLGSNTPVNAVRATFDGL 145          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 55/144 (38.19%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L+D V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK +++ V        +G   T+P +V G  G   + M PA  G+G+ A    + VL+ AG+ D+ + S GS   + N V+A  E L
Sbjct:   10 ELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEV------PMVG--STIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPI-NVVRATVEGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_OCEIH (30S ribosomal protein S5 OS=Oceanobacillus iheyensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL--LKT 799
            L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AI+ A+  AK ++I V        +G   T+P ++ G+ GS  V M PA  G G+++    + +L+ AG+ D+ T S GS   + N ++A    L  LKT
Sbjct:   12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKNLISV------PIVGT--TIPHEIHGQFGSGNVLMKPAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPI-NMIRATLNGLTNLKT 150          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_CLOPE3.136e-1538.4630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOP13.136e-1538.4630S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_GEOSW4.096e-1537.5030S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_LEUMM5.349e-1536.8130S ribosomal protein S5 OS=Leuconostoc mesenteroi... [more]
RS5_ANOFW5.349e-1537.5030S ribosomal protein S5 OS=Anoxybacillus flavithe... [more]
RS5_OENOB6.986e-1537.7630S ribosomal protein S5 OS=Oenococcus oeni (strai... [more]
RS5_LACPL6.986e-1538.5130S ribosomal protein S5 OS=Lactobacillus plantaru... [more]
RS5_LACBA6.986e-1536.1130S ribosomal protein S5 OS=Lactobacillus brevis (... [more]
RS5_ENTFA6.986e-1538.1930S ribosomal protein S5 OS=Enterococcus faecalis ... [more]
RS5_OCEIH9.124e-1536.4930S ribosomal protein S5 OS=Oceanobacillus iheyens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
back to top