EY659773

Overview
NameEY659773
Unique NameEY659773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.101e-67
Identity = 127/218 (58.26%), Postives = 147/218 (67.43%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            MASSM+S+  +AT    + AQASMVAPF G                                     LKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YLL  GWIPC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP G
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNG-------------------------------------LKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.203e-67
Identity = 132/218 (60.55%), Postives = 152/218 (69.72%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            M SSM+ S+  AT  RAS AQ+SMVAPFT                                     GLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YLLRS WIPCLEF   KG+V+RE+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G
Sbjct:    1 MVSSMMVSSA-ATFTRASPAQSSMVAPFT-------------------------------------GLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.203e-67
Identity = 118/178 (66.29%), Postives = 144/178 (80.90%), Query Frame = 2
Query:  155 ATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            A+   +N  T++A+     Q   V P  GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.136e-67
Identity = 125/218 (57.34%), Postives = 156/218 (71.56%), Query Frame = 2
Query:   41 MASSMISSTTVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            MASSM+S+  VAT  A+R++ AQASMVA                                     P TGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVA-------------------------------------PFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.217e-66
Identity = 118/178 (66.29%), Postives = 143/178 (80.34%), Query Frame = 2
Query:  155 ATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            A+   +N  T++A+     Q   V P  GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YLL +GW+PCLEFE   G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:    2 ASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.590e-66
Identity = 117/164 (71.34%), Postives = 136/164 (82.93%), Query Frame = 2
Query:  197 NGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            N   VQ     P TGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YLLR GW+PC+EFELEKG+V+R+++SSPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISF+A+ P
Sbjct:   13 NRAPVQANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.590e-66
Identity = 125/218 (57.34%), Postives = 153/218 (70.18%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            MASS++SS  VAT +R   AQASMVAPFT                                     GLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YLL + W+PCLEFE + G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFT-------------------------------------GLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.590e-66
Identity = 114/170 (67.06%), Postives = 140/170 (82.35%), Query Frame = 2
Query:  185 SIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            ++A+     Q   + P TGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YLL++GW+PCLEFE E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   11 AVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.076e-66
Identity = 129/216 (59.72%), Postives = 151/216 (69.91%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            MASSM++ST  A   RA  AQ+SMVAPF                                      GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFN-------------------------------------GLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.712e-66
Identity = 128/214 (59.81%), Postives = 147/214 (68.69%), Query Frame = 2
Query:   47 SSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            +SMISS+ V T +RAS  Q++ VAPF                                      GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFELEKG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF+A  P
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFG-------------------------------------GLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
The following BLAST results are available for this feature:
BLAST of EY659773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS1_AMAHP1.101e-6758.26Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MUSAC3.203e-6760.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR3.203e-6766.29Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS6_MESCR7.136e-6757.34Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_MESCR1.217e-6666.29Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_TRIRP1.590e-6671.34Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL1.590e-6657.34Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_NICSY1.590e-6667.06Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS5_LEMGI2.076e-6659.72Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS3_PEA2.712e-6659.81Ribulose bisphosphate carboxylase small chain 3A, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659773 ID=EY659773; Name=EY659773; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCT
CAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCCTCAAGTCT
TCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCAT
TGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTG
GCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAA
GCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTG
CTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCT
CACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATG
TATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCA
GAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGC
GTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAG
GTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTAT
TATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGNTCGGTTTGCG
TTTAATTTGTACTTANGCTGCTGNTGCTGCTGCTCAAACTTTTTGGGTTT
CTCCCCGACTTTGGCTTTTTTTTTTATAATATTT
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