EY659773

Overview
NameEY659773
Unique NameEY659773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 4.052e-62
Identity = 108/150 (72.00%), Postives = 129/150 (86.00%), Query Frame = 2
Query:  239 GLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YLLR+ W+PC+EF  E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:   24 GCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.292e-62
Identity = 120/216 (55.56%), Postives = 148/216 (68.52%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            MA+S    ++VATA  A+ AQASMVAPF G                                     LKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  +P
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVG-------------------------------------LKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.027e-62
Identity = 108/159 (67.92%), Postives = 132/159 (83.02%), Query Frame = 2
Query:  212 QCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 688
            Q   V P TGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:   13 QANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.851e-61
Identity = 106/157 (67.52%), Postives = 133/157 (84.71%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   13 VAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.904e-60
Identity = 105/157 (66.88%), Postives = 131/157 (83.44%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:   13 VAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.469e-60
Identity = 104/157 (66.24%), Postives = 132/157 (84.08%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K++ YL+RS W+PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:   13 VAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.342e-59
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   13 VAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 9.342e-59
Identity = 106/157 (67.52%), Postives = 126/157 (80.25%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   13 VAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.220e-58
Identity = 106/157 (67.52%), Postives = 127/157 (80.89%), Query Frame = 2
Query:  224 VWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            V P  GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YLLRS W+PCLEF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:   13 VAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY659773 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.636e-58
Identity = 120/218 (55.05%), Postives = 143/218 (65.60%), Query Frame = 2
Query:   41 MASSMISSTTVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 694
            MASSM+ ST  A  +R S AQ++MV PF G                                     L SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YL+R+GWIPC+EF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISFL  KP G
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAG-------------------------------------LHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
The following BLAST results are available for this feature:
BLAST of EY659773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS1_LEMGI4.052e-6272.00Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_FRIAG5.292e-6255.56Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS6_FLAPR9.027e-6267.92Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HORVU5.851e-6167.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT2.904e-6066.88Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT6.469e-6066.24Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ9.342e-5967.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI9.342e-5967.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ1.220e-5867.52Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_ZANAE4.636e-5855.05Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-H08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659773 ID=EY659773; Name=EY659773; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCT
CAATGATCTCATCGACCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCCTCAAGTCT
TCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCAT
TGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTG
GCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAA
GCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCTGGATTCCCTG
CTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGCT
CACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATG
TATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCA
GAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGC
GTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGTCTAG
GTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTAT
TATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGNTCGGTTTGCG
TTTAATTTGTACTTANGCTGCTGNTGCTGCTGCTCAAACTTTTTGGGTTT
CTCCCCGACTTTGGCTTTTTTTTTTATAATATTT
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