EY659748

Overview
NameEY659748
Unique NameEY659748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7601 contig Csv1_Contig7601:584..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659748 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.822e-26
Identity = 62/170 (36.47%), Postives = 90/170 (52.94%), Query Frame = 1 
Query:    4 RVRSMLIGKGD----REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 492
            R+++ + G G     RE+R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  123 RIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291
[Close]
BLAST of EY659748 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.322e-24
Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 1 
Query:   19 LIGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 489
            L G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  118 LYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263
The following BLAST results are available for this feature:
BLAST of EY659748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH8.822e-2636.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH6.322e-2438.36Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659748 ID=EY659748; Name=EY659748; organism=Citrus sinensis; type=EST; length=796bp
CCACGCGTCCGATCTATGCTAATCGGAAAAGGCGATAGAGAACAGAGAGT
GAACCTCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCT
GGAACCATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTT
TACAAAAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGT
GTATTCAACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAG
AGAAAATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTT
GATATTGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCC
AGGTAACTGGTGGGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAG
CAAGAAGATACAGATGGGTTCGTCTCAACCACATGATCTATGATTATTGC
ACTGATAAATCAAGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCAT
ATAAATTCAACCCGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCC
GTATCATATCATGTATATTACTTCACGTACACGTCCTTTGTATTATTCCC
TATTCGTGTGAAAAGACTTATACGCATATCAAGGGAGGGGCGGGAGGGGA
AATAAACATTGTGTGCATTTAAATGTAATTATGGGAGTGGGAAATATGTG
GGTTTTCTGCTCTGCTTGTACATATATAAGTCTGAAATTGATGCACAGTA
TTCTGTGCCAAAAAAGCTTCTTCATAATTGTGAAAAAAAAAAAAAA
back to top