EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:195..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.913e-26
Identity = 65/172 (37.79%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVN------KAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGEHQR 914
            +L+VGN+P ++++++L  + E+ G +EIAEV+Y++ + RSR FGFVTM TVE+A   +E  +  +I GR + VN      +     T      + VE  +++Y+GNL   V N  L+  FSE GKV+ A+V     T +S GFG  + +SE E+  AI AL+  +  G+  R
Sbjct:   85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIR 256          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.074e-20
Identity = 52/93 (55.91%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPE---RAPR 680
            D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST  E E A + F+ Y+ +GR L VN   P   + E   R PR
Sbjct:   98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190          

HSP 2 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  693 GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            G R+YVGNL W VD+  LE +F+E GKVV ARV YDR++GRS+GFG  T++S  E+  AI +L+G
Sbjct:  256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNG 320          

HSP 3 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 653
            +L+VGNL + VD   L  LF + G V  A VIY+R++ RS+GFGFVT+S+ +E +KA+   +  D+DGR + V++A  R
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.076e-20
Identity = 58/164 (35.37%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  414 AKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLT--VNKAAPRGTQPERAPRV----VEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            A +FVG L + +D E L   FE  G V  A VIY R TDRSRG+G+V       AEKA++     +IDGR +   ++ + P G   +RA +      EP   +++GNL +  D   + ++F++HG+VV+ R+    ET + +GFG    ++  +   A+ AL G
Sbjct:  168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN-DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.191e-17
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDI-DGRLLTVNKAAPRGTQPERAPRVVEP----------GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            ++V N   D D EKL   FE  G +   +V+ ++E  +S+GFGFV   T E AE AV+  +  D+ +G+ L V +A  +  + +   R  E           G  +YV NL   +D+ RL   FS +G + +A+V  D E GRS+GFG     + +E   A+  L+GR+
Sbjct:  185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRV 351          

HSP 2 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 43/162 (26.54%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            +F+ NL   +D++ +   F   G +   +V  + E   S+G+GFV   T E A  +++  +   ++G+ + V K  PR  + +      +    +YV N   + D+ +L++ F  +GK+ + +V   +E G+S+GFG     +      A+ AL+G+  MGE
Sbjct:   92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFETTEAAEAAVQALNGKD-MGE 250          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.602e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GRI
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.602e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GRI
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.602e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GRI
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.602e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GRI
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.602e-16
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GRI
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRI 365          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 57/168 (33.93%), Postives = 89/168 (52.98%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +FV N+  D+D EKL  LF + G  E  +VI +  + +S+GFGFV   T E A+KAV   H   IDG++L V +A  +  +     R  E          PG  IY+ NL   +++ +L++ FS  G +  A+V    E G+ +GFG+   +S  E   A+  ++GR+
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMNGRV 365          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
RRP2_SPIOL2.913e-2637.7930S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ROC2_ARATH4.074e-2055.9129 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
NSR1_YEAST9.076e-2035.37Nuclear localization sequence-binding protein OS=S... [more]
PABP_DROME7.191e-1733.73Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP5_PONPY1.602e-1634.52Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR1.602e-1634.52Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_HYLLA1.602e-1634.52Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN1.602e-1634.52Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO1.602e-1634.52Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PABP5_MACMU2.092e-1633.93Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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