EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   + L   FE+ G +    V+ + +T RSRGFGFVT S VEE + ++     + +DGR++   +A  R  +    P       +I+VG +  + +   L      +GK+    V  DR++G+ RGF   T
Sbjct:   28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSR--EDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVT 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_XENLA (Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 43/152 (28.29%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLF+G L ++   E L   FE+ GT+    V+ +  + RSRGFGFVT  + +E + A+     + +DGR++   +A  R  +    P       +I+VG +  + +   L + F ++GK+    +  DR +G+ RGF   T      ++  +
Sbjct:   15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA-RPHKVDGRVVEPKRAVSR--EDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.228e-13
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            +A L+VG L  ++    L  +F   G +    V  +  T  S G+ +V  +  E  +KA++  +  +I+GR   +          ER P + + G   I++ NL   +DN  L + FS  G+V++ +V  D E G SRGFG      E++  DAI A++G +  G
Sbjct:   49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRI-------MWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNG 205          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAAL-DGRI 893
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+  DRETG S+GFG     SE +   A  A+ DG I
Sbjct:  490 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 637          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAAL-DGRI 893
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+  DRETG S+GFG     SE +   A  A+ DG I
Sbjct:  488 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 635          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAAL-DGRI 893
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+  DRETG S+GFG     SE +   A  A+ DG I
Sbjct:  489 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 636          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAAL-DGRI 893
            L + NL Y    E L  +FEKA  +++ +     +  +S+G+ F+  ++ E+A++A+   ++ +I+GR + +    PRG+   R+    +P   ++V  L  +     L++ F      V AR+  DRETG S+GFG     SE +   A  A+ DG I
Sbjct:  488 LVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS----QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 635          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.403e-12
Identity = 45/164 (27.44%), Postives = 77/164 (46.95%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGEHQ 911
            L V  LP D+   +L  LF   G +    ++ + +T  S G+ FV  ++  +A+ A++  +   +  + L V+ A P G   +           +YV NLP  + +  LE++F ++G +V   +  D+ TGR RG          E  +AI+AL+  I  G  Q
Sbjct:  104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDT--------NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQ 259          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.394e-12
Identity = 44/164 (26.83%), Postives = 77/164 (46.95%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGEHQ 911
            L V  LP D+   +L  LF   G +    ++ + +T  S G+ FV  ++  +A+ A++  +   +  + L V+ A P G   +           +YV NLP  + +  LE++F ++G +V   +  D+ TG+ RG          E  +AI+AL+  I  G  Q
Sbjct:   87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDT--------NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQ 242          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.394e-12
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            DA ++VG L   V    L  L  +AG V    +  +R T   +GFGFV     E+A+ A+++ +   + G+ + VNKA+          + ++ G  I+VGNL  EVD   L   FS  G ++   ++  D ++G S+GF     AS    + A+ A++G+
Sbjct:   12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAH-------EKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQ 165          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
RO31_XENLA4.824e-1331.21Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
ROA1_XENLA6.300e-1328.29Heterogeneous nuclear ribonucleoproteins A1 homolo... [more]
PABP_KLULA8.228e-1329.70Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_PONAB1.075e-1229.56Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MESAU1.075e-1229.56Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
NUCL_MACFA1.075e-1229.56Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN1.075e-1229.56Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
SXL_MUSDO1.403e-1227.44Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CHRRU2.394e-1226.83Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SF3B4_CAEEL2.394e-1230.43Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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