EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 43/140 (30.71%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRET 809
            +++ N+  +V  E+   +FEK G +  A +  ++E  +SRGFGFV  ST + A+ AV+  +  +I G+ L V +A  +  + E   +  E           G  +YV NL  +VD+ +L ++FS  G + +A+V  D  T
Sbjct:  235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVT 373          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 42/165 (25.45%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            D K+F+G L +D   + L     + G V    +  +  T RSRGFGFV        +K +E+   + +DG+L+   +A        +A +  EP  +++VG L  +    ++++ F   G++ N  +  D +T   RGF   T   E  +   + +   +I  G+
Sbjct:   28 DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL-KEHKLDGKLIDPKRA--------KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 183          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 42/165 (25.45%), Postives = 76/165 (46.06%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            D K+F+G L +D   + L     + G V    +  +  T RSRGFGFV        +K +E+   + +DG+L+   +A        +A +  EP  +++VG L  +    ++++ F   G++ N  +  D +T   RGF   T   E  +   + +   +I  G+
Sbjct:  147 DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL-KEHKLDGKLIDPKRA--------KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGK 302          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBPA_SYNY3 (Putative RNA-binding protein rbpA OS=Synechocystis sp. (strain PCC 6803) GN=rbpA PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  702 IYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            IYVGNL ++V  A L  VF+E+G V   ++  DRETGR RGFG   + ++ E   AI ALDG  WMG
Sbjct:    3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMG 69          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD---RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQP-------ERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRE-TGRSRGFGLXTMASETELNDAIAAL 881
            LF+ NL +D   EKL  +F K GTV+   +   +       S GFGFV     E+A+KA++    + +DG  L V + + R T+P       ++ PR  +   +I V N+P++  +  + ++FS  G++   R+      TG  RGFG     ++ +   A  AL
Sbjct:  732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEV-RISERATKPAVTLARKKQVPR-KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 48/153 (31.37%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLF+G L      E L + + + G V    V+ +  T RSRGFGF+T +     ++A E    + IDG+ +   +A PR   PER  R       +++VG L    D   L + F + G VV+ ++  D+ TG+ RGF          ++ AI
Sbjct:   33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN-RPHIIDGKTVEAKRALPR---PERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFR 701
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A        R  R    G R
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFR 701
            + KLFVG L +D + + L  +F K G +    V+ +RET RSRGFGFVT   +++A+ A+   +   +DGR + V++A        R  R    G R
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 43/138 (31.16%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYD 800
            +++ N+  +V+ E+   LFEK G  EI     +R+++ +SRGFGFV  ST E A+ AVE  +  ++  + L V +A  +  + E   +  E           G  +YV NL  +VD+ +L ++F  +G + +A+V  D
Sbjct:  225 IYIKNIDPEVEDEEFRKLFEKFG--EITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR 653
            + FVG L +  D + L   F K G V  +++I +RET RSRGFGFVT ++ E   +A+E  +  D+DGR +TVN+A  R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          

HSP 2 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  696 FRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            +R +VG L W  D+  L+  FS++G V+++++  DRETGRSRGFG  T AS+  +  AI A++G+
Sbjct:    6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQ 70          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PABP_ASPFU2.647e-1130.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
HNRDL_MOUSE2.647e-1125.45Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRDL_HUMAN2.647e-1125.45Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
RBPA_SYNY33.457e-1150.75Putative RNA-binding protein rbpA OS=Synechocystis... [more]
RBM19_HUMAN3.457e-1129.70Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
RB97D_DROME3.457e-1131.37Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
CIRBP_PONAB3.457e-1136.08Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN3.457e-1136.08Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
PABP_EMENI4.515e-1131.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GRP_HORVU4.515e-1144.30Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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