EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:195..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 45/148 (30.41%), Postives = 78/148 (52.70%), Query Frame = 3 
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASET 854
            D K+F+G L ++   + L   FE+ G V    V+ +  T RSRGFGF+T    +   + +   H   +DG+++   +A PR  Q + A        +++VG +P +         F++ G+V++A +  D++TGR RGFG  T  +E+
Sbjct:  162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHH--LDGKIIDPKRAIPREEQEKTA--------KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENES 299
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 3 
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   + L   FEK GT+    V+ + +T RSRGFGFVT S VEE + A+     + +DGR++   +A  R          V+PG      +I+VG +  + +   L   F ++GK+    V  DR++G+ RGF   T
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDS-------VKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 3 
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   + L   FEK GT+    V+ + +T RSRGFGFVT S VEE + A+     + +DGR++   +A  R          V+PG      +I+VG +  + +   L   F ++GK+    V  DR++G+ RGF   T
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDS-------VKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 3 
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGF-----RIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   + L   FEK GT+    V+ + +T RSRGFGFVT S VEE + A+     + +DGR++   +A  R          V+PG      +I+VG +  + +   L   F ++GK+    V  DR++G+ RGF   T
Sbjct:   36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDS-------VKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R  E           G  +YV NL   +D+ RL + FS  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R  E           G  +YV NL   +D+ RL + FS  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.771e-15
Identity = 53/168 (31.55%), Postives = 89/168 (52.98%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R  E           G  +YV NL   +D+ RL + FS  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.313e-15
Identity = 45/161 (27.95%), Postives = 81/161 (50.31%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            L V  LP ++  ++   LF   G +E  +++ ++ T +S G+GFV  S   +A+KA+   +   +  + + V+ A P       A         +YV  LP  +    +EQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+  +G
Sbjct:   41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.021e-15
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D ++L  +F   G     +V+ + ++ RSRGFGFV     EEA+KAV   +  +++GR++ V +A  R  +     R  E           G  +YV NL   +D+ RL + F  +G + +A+V    E G S+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357

HSP 2 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 45/171 (26.32%), Postives = 84/171 (49.12%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR------IWMGEHQR 914
            +F+ NL   +D++ L   F   G +   +V+ +     SRG+GFV   T E A +A++  +   ++ R + V     R  +       V     +Y+ N   ++D+ RL ++FS  G  ++ +V  D ++GRSRGFG     +  E   A++ ++G+      I++G  Q+
Sbjct:  101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
[Close]
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.021e-15
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 3 
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            L V  LP ++  E+   LF   G +E  +++ ++ T +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+
Sbjct:   41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
YHKF_SCHPO1.771e-1530.41Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
ROA3_RAT1.771e-1534.25Heterogeneous nuclear ribonucleoprotein A3 OS=Ratt... [more]
ROA3_MOUSE1.771e-1534.25Heterogeneous nuclear ribonucleoprotein A3 OS=Mus ... [more]
ROA3_HUMAN1.771e-1534.25Heterogeneous nuclear ribonucleoprotein A3 OS=Homo... [more]
PABP1_PONAB1.771e-1531.55Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN1.771e-1531.55Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.771e-1531.55Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
ELAV3_MOUSE2.313e-1527.95ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
EPABA_XENLA3.021e-1530.95Embryonic polyadenylate-binding protein A OS=Xenop... [more]
ELAV4_RAT3.021e-1529.30ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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