EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:195..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.021e-15
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            L V  LP ++  E+   LF   G +E  +++ ++ T +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+
Sbjct:   53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.021e-15
Identity = 46/157 (29.30%), Postives = 79/157 (50.32%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            L V  LP ++  E+   LF   G +E  +++ ++ T +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+
Sbjct:   48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 3.021e-15
Identity = 45/161 (27.95%), Postives = 81/161 (50.31%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            L V  LP ++  ++   LF   G +E  +++ ++ T +S G+GFV  S   +A+KA+   +   +  + + V+ A P       A         +YV  LP  +    +EQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+  +G
Sbjct:   41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 193          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETEL----NDAIAALDGR 890
            KLFVG L ++   E L+  F + G +    V+ N E+ RSRGFGFVT +        ++    + +DGR +      PR  Q  +       G+++++G LP  V    L   F+ +GKV    + YD+E  +SRGFG  +   E+ +    N+    L+G+
Sbjct:    8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPRTLQKPKKGG----GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGK 164          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
ELAV4_MOUSE3.021e-1529.30ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN3.021e-1529.30ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
ELAV3_HUMAN3.021e-1527.95ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ROA1_RAT3.946e-1533.33Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR3.946e-1533.33Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE3.946e-1533.33Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN3.946e-1533.33Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN3.946e-1533.33Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RB27C_DROME3.946e-1530.86Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
RA1L3_HUMAN3.946e-1533.33Putative heterogeneous nuclear ribonucleoprotein A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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