EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:195..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 51/168 (30.36%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L  +F K G     +V+ +  + +S+GFGFV+  + E A+KAVE  +  DI+G+L+ V +A  +  +     ++ E           G ++Y+ NL   +D+ +L   FS  G +  +RV   +E G+S+GFGL   +S  +   A+  ++GRI
Sbjct:  192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI--SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRI 356          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.946e-15
Identity = 45/161 (27.95%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMG 902
            L V  LP ++  E+   LF   G +E  +++ ++ T +S G+GFV      +A+KA+   +   +  + + V+ A P       A         +YV +LP  ++   +EQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+  +G
Sbjct:   36 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 188          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.154e-15
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  435 LPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            LP ++  E+L  LF   G +E  +++ ++ T +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.731e-15
Identity = 47/141 (33.33%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVEE + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.731e-15
Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L  LF K G     +V+ + E+ +S+GFGFV+    E+A+KAV+  +  +++G+ + V +A  +  +     R  E              +YV NL   +D+ RL + FS  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 46/152 (30.26%), Postives = 78/152 (51.32%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLF+G L ++   E L   FE+ GT+    V+ +  T RSRGFGFVT +TVE+ + A+     + +DGR++   +A  R  +  + P       +I+VG +  + +   L   F ++GK+    +  DR +G+ RGF   T      ++  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.791e-15
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D ++L  +F   G     +V+ +  + RSRGFGFV     EEA+KAV   +  +++GR++ V +A  R  +     R  E           G  +YV NL   +D+ RL + FS +G + + +V    E G S+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S + E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L + F E+GK+ +  +  D+++G+ RGFG  T
Sbjct:   10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAKPGAHVTVK--KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVT 147          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   +VD E L  LF + G     +V+ +    +S+GFGFV+    E+A KAVE  +  +I G+++ V +A  +  +     R  E           G  +Y+ NL   +D+ +L + FS  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 357          

HSP 2 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 41/157 (26.11%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            +F+ NL   +D++ L   F   G +   +V+ +   + S+G+ FV   T E A+KA+E  +   ++ R + V +   R  +        +    +Y+ N   EVD+  L+++FS+ GK ++ +V  D   G+S+GFG  +     + N A+  ++G+
Sbjct:  101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGK 254          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    + L   F K G +    V+ +  T RSRGFGFVT +     +K +   H +++D + +    A PR  QP+   R      +I+VG L        ++Q F + GKV +A + +D+ T R RGFG  T  +E
Sbjct:   22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PAB4L_HUMAN3.946e-1530.36Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
ELAV3_XENLA3.946e-1527.95ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV2_RAT5.154e-1529.61ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
RA1L2_HUMAN6.731e-1533.33Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
PABP3_HUMAN6.731e-1530.95Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
ROA1_MACMU8.791e-1530.26Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
EPABB_XENLA8.791e-1530.95Embryonic polyadenylate-binding protein B OS=Xenop... [more]
RO22_XENLA1.148e-1430.50Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
PABP4_HUMAN1.148e-1430.36Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
MSI2H_MOUSE1.148e-1432.41RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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