EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    + L   F K G +    V+ +  T RSRGFGFVT +     +K +   H +++D + +    A PR  QP+   R      +I+VG L        ++Q F + GKV +A + +D+ T R RGFG  T  +E
Sbjct:   22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPH-HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENE 161          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            L V  LP ++  E+L  LF   G +E  +++ ++ T+ +S G+GFV     ++AEKA+   +   +  + + V+ A P       A         +YV  LP  +    LEQ+FS++G+++ +R+  D+ TG SRG G        E  +AI  L+G+
Sbjct:   68 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA--------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.148e-14
Identity = 45/156 (28.85%), Postives = 78/156 (50.00%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            L V  LP ++  ++L  LF   G VE A++I ++    S G+GFV   T ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +FS  G+++N+RV  D+ TG SRG         +E  +AI + +G
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVT---MSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGF 827
            KLF+G L Y    E L   FEK G +    V+ +  T RSRGFGF+T    S ++EA+K+      + IDGR++   +A PR  Q   +P       +++VG L  + D   +   F   G +V+  +  D+ETG+ RGF
Sbjct:   32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGF 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            ++V NL  +VD+ K   +F+  G V    +  ++E  +SRGFGFV     E A  AV+  +  +IDG+ L V +A  +  + +   R+ E           G  ++V NL   +D+ +LE+ F   G + +ARV  D + G+S+GFG    +S  E   AI  ++ R+  G+
Sbjct:  241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGK 410          

HSP 2 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 46/160 (28.75%), Postives = 79/160 (49.38%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            D  +F+ NL   +D++ L   F   G +   +V  + E  +S+ FGFV   T E AE A+E  +   ++ R + V K   +  +  +   +      +YV NL  EVDNA+ E++F   G V +  +  D+E G+SRGFG     +     +A+  ++ +
Sbjct:  145 DGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDK 302          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.499e-14
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            L V  LP ++  E+L  LF   G VE A++I ++    S G+GFV   T ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +FS  G+++N+RV  D+ TG SRG         +E  +AI +  G
Sbjct:   22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDA--------NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.958e-14
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D+D E+L   F + G     +V+ + +  +SRGFGFV+    E+A+KAV+  +  D++G+ + V +A  +  +     R  E           G  +YV NL   +D+ RL + F+  G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F E+GK+    +  DR++G+ RGFG  T
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F E+GK+    +  DR++G+ RGFG  T
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F E+GK+    +  DR++G+ RGFG  T
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MSI2H_HUMAN1.148e-1432.41RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
ELAV2_XENLA1.148e-1429.75ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV1_HUMAN1.148e-1428.85ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ROA1_DROME1.499e-1435.00Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
PABP_PICGU1.499e-1430.81Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_MOUSE1.499e-1429.49ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
PABPB_XENLA1.958e-1430.36Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
ROA2_RAT2.558e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_PONAB2.558e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_MOUSE2.558e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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