EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F E+GK+    +  DR++G+ RGFG  T
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 159          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.558e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F E+GK+    +  DR++G+ RGFG  T
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVT 147          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L +    E L   +E+ G +    V+ +  + RSRGFGFVT S++ E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L   F+E+GK+    +  DR++G+ RGFG  T
Sbjct:   10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESGKPGAHVTVK--KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVT 147          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   E L   +E+ GT+    V+ +  + RSRGFGFVT S + E + A+     + IDGR++   +A  R    +    V     +++VG +  + +   L + F E+GK+ +  +  D+++G+ RGF   T
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT-RPHTIDGRVVEPKRAVAREESAKPGAHVTVK--KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVT 147          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.340e-14
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    E L   F + G V+   V+ +  T RSRGFGFVT       +K +    R+++D + +    A PR  QP+   R      +I+VG L        ++Q F + GKV +A + +D+ T R RGFG  T  SE
Sbjct:   21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 160          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.363e-14
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRET 809
            ++V N+  +V  ++   LFEK G V  + +  ++ET +SRGFGFV  ++ E+A KAV+  +  +  G+ L V +A  +  + E   +  E           G  +Y+ NL  EVD+ +L Q+FSE G + +A+V  D  T
Sbjct:  244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383          

HSP 2 Score: 68.9366 bits (167), Expect = 4.515e-11
Identity = 42/163 (25.77%), Postives = 82/163 (50.31%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGEH 908
            +F+ NL   +D++ L   F   G +   +V  + E   S+G+GFV   T E A +A++  +   ++ + + V    P+  +  +   +      IYV N+  EV +     +F ++G V ++ +  D+ETG+SRGFG     S  + + A+  L+ + + G++
Sbjct:  151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQN 312          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGT--QPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGF 827
            KLF+G L Y    E L   FE+ G +    V+ + +T RSRGFGF+T S     + A +    + +DGR++   +A PR    +PE    V     +++VG +  E++   L   F ++G VV+A +  D+ET + RGF
Sbjct:   18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVK----KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGF 151          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 45/162 (27.78%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGR-SRGFGLXTMASETELNDAIAALDGRIWMG 902
            L V  LP ++  E+   LF   G +E  +++ ++ T +S G+GFV      +A+KA+   +   +  + + V+ A P       A         +YV +LP  ++   +EQ+FS++G+++ +R+  D+ TG  SRG G        E  +AI  L+G+  +G
Sbjct:   37 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA--------NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLG 190          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 44/156 (28.21%), Postives = 77/156 (49.36%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            L V  LP ++  ++L  LF   G VE A++I ++    S G+GFV     ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +F   G+++N+RV  D+ TG SRG         +E  +AIA+ +G
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDA--------NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.698e-14
Identity = 51/163 (31.29%), Postives = 73/163 (44.79%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA----------PRVVEP-GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLFVG L +    E L   F + G V    ++ ++ T++SRGFGFV           V     + +DGR +      PRG QPER+          PR       +I+VG +P       L++ F+  G V    + YD E  R RGFG  T   E  ++ A+
Sbjct:   11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
ROA2_HUMAN2.558e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN2.558e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_SAGOE3.340e-1431.21Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
RO21_XENLA3.340e-1430.50Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
MSI1H_HUMAN3.340e-1433.79RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
PABP_MAGGR4.363e-1432.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROA1_SCHAM5.698e-1433.81Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
ELAV3_XENTR5.698e-1427.78ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_XENTR5.698e-1428.21ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
DAZP1_XENLA5.698e-1431.29DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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