EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12720 contig Csv1_Contig12720:195..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            ++V N+  +   E L  LF   G   I  +   ++ + +S+GFGFV     E A KAVE  +  +I+G+ + V +A  +  + E   +  E           G  +++ NL   +D+ +LE+ F   G + +ARV  D ETG+S+GFG    +S  E   AI  ++ R++ G+
Sbjct:  235 IYVKNIDLEYSEEDLKKLFTPYGA--ITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGK 404          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 50/168 (29.76%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            +++ N   D++ E+L  +F K G     +V+ + +  +S+GFGFV+    E+A+KAV+  +  D++G+ + V +A  +  +     R  E           G  +YV NL   +D+ RL + F   G + +A+V    E GRS+GFG    +S  E   A+  ++GRI
Sbjct:  193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    E L   F + G +  A V+ +  T RSRGFGFVT S     +K +     +++DG+     K  P+   P RA P++V    +I+VG L        ++  F + G + +A + +D++T R RGFG  T  SE
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGK-----KVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSE 169          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRPM_RAT (Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            + F+ N+P+DV  + L  L  EK G V   E++ + E  +SRG   V     E  +KA E+ +++ + GR L V K  P G    RA  +    G  ++V NL ++V   +L++VFS  G VV A +  D++ G+SRG G  T     E   AI+  +G++
Sbjct:   71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQL 228          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839
            KLF+G L ++   + L   FE+ G +    V+ + +T RSRGFGFVT S VEE + ++     + +DGR++   +A  R  +    P       +I+VG +  + +   L   F  +GK+    V  DR++G+ RGF   T
Sbjct:   28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSR--EDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 51/168 (30.36%), Postives = 84/168 (50.00%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR-----GTQPERAPRVV---EPGFRIYVGNLPWEVDNAR-LEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            ++ LFV NL +    + L   F   G ++ A V+ N ET  +RG+GFVT S +E+A++A +      + GR+L ++ A PR      T   +A +     +   R+ + NLPW +   + LE  FS+ GKV   ++   +  GR  GF    M       +A+ +L+G
Sbjct:    4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            ++  N+  D   E+   LFE  G +    +  + E  +S+GFGFV     E A KAV+  +  +I+G+ + V +A  +  + E   +  E           G  +++ NL   +D+ +LE+ F   G + +ARV  D ETG+S+GFG    +S  E   AI  ++ R+  G+
Sbjct:  234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGK 403          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    E L   F + G V+   V+ +  T RSRGFGFVT       +K +    R+++D + +    A PR  QP+   R      +I+VG L        ++  F + GKV +A + +D+ T R RGFG  T  SE
Sbjct:   21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 160          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851
            K+F+G L +    E L   F + G V+   V+ +  T RSRGFGFVT       +K +    R+++D + +    A PR  QP+   R      +I+VG L        ++  F + GKV +A + +D+ T R RGFG  T  SE
Sbjct:   21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 160          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13
Identity = 51/162 (31.48%), Postives = 71/162 (43.83%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA---------PRV-VEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLFVG L +    E L   F + G V    ++ ++ T++SRGFGFV           V     + +DGR +      PRG QPER          PR       +I+VG +P       L + F + G V    + YD E  R RGFG  T   E  ++ A+
Sbjct:   11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PABP_PICST7.442e-1429.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPA_XENLA7.442e-1429.76Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
MSIR6_DROME7.442e-1432.88RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
HNRPM_RAT7.442e-1433.54Heterogeneous nuclear ribonucleoprotein M OS=Rattu... [more]
RO32_XENLA9.719e-1431.91Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
YOCE_SCHPO1.269e-1330.36Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
PABP_DEBHA1.269e-1329.07Polyadenylate-binding protein, cytoplasmic and nuc... [more]
MSI1H_RAT1.269e-1333.10RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE1.269e-1333.10RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]
DAZP1_MOUSE1.269e-1331.48DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
back to top