EY659746
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETD-RSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905 ++V N+ + E L LF G I + ++ + +S+GFGFV E A KAVE + +I+G+ + V +A + + E + E G +++ NL +D+ +LE+ F G + +ARV D ETG+S+GFG +S E AI ++ R++ G+ Sbjct: 235 IYVKNIDLEYSEEDLKKLFTPYGA--ITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGK 404
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 50/168 (29.76%), Postives = 87/168 (51.79%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893 +++ N D++ E+L +F K G +V+ + + +S+GFGFV+ E+A+KAV+ + D++G+ + V +A + + R E G +YV NL +D+ RL + F G + +A+V E GRS+GFG +S E A+ ++GRI Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851 K+F+G L + E L F + G + A V+ + T RSRGFGFVT S +K + +++DG+ K P+ P RA P++V +I+VG L ++ F + G + +A + +D++T R RGFG T SE Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGK-----KVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSE 169
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: HNRPM_RAT (Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4) HSP 1 Score: 78.1814 bits (191), Expect = 7.442e-14 Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLF-EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA-PRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893 + F+ N+P+DV + L L EK G V E++ + E +SRG V E +KA E+ +++ + GR L V K P G RA + G ++V NL ++V +L++VFS G VV A + D++ G+SRG G T E AI+ +G++ Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQL 228
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.719e-14 Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXT 839 KLF+G L ++ + L FE+ G + V+ + +T RSRGFGFVT S VEE + ++ + +DGR++ +A R + P +I+VG + + + L F +GK+ V DR++G+ RGF T Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSR--EDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVT 165
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 51/168 (30.36%), Postives = 84/168 (50.00%), Query Frame = 3 Query: 411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPR-----GTQPERAPRVV---EPGFRIYVGNLPWEVDNAR-LEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887 ++ LFV NL + + L F G ++ A V+ N ET +RG+GFVT S +E+A++A + + GR+L ++ A PR T +A + + R+ + NLPW + + LE FS+ GKV ++ + GR GF M +A+ +L+G Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMNSLNG 170
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905 ++ N+ D E+ LFE G + + + E +S+GFGFV E A KAV+ + +I+G+ + V +A + + E + E G +++ NL +D+ +LE+ F G + +ARV D ETG+S+GFG +S E AI ++ R+ G+ Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGK 403
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851 K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K + R+++D + + A PR QP+ R +I+VG L ++ F + GKV +A + +D+ T R RGFG T SE Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 160
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 48/145 (33.10%), Postives = 72/145 (49.66%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASE 851 K+F+G L + E L F + G V+ V+ + T RSRGFGFVT +K + R+++D + + A PR QP+ R +I+VG L ++ F + GKV +A + +D+ T R RGFG T SE Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 160
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.269e-13 Identity = 51/162 (31.48%), Postives = 71/162 (43.83%), Query Frame = 3 Query: 417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA---------PRV-VEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872 KLFVG L + E L F + G V ++ ++ T++SRGFGFV V + +DGR + PRG QPER PR +I+VG +P L + F + G V + YD E R RGFG T E ++ A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 151
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bpback to top |