EY659746

Overview
NameEY659746
Unique NameEY659746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13
Identity = 49/168 (29.17%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            ++V NLP ++  ++L   F K G +  A V+   ++  SR FGFV     E A  AVE  +   +   +L V +A  +  + E   R  E           G  +Y+ NL   VD+ +L+++FSE+G V +++V  + + G SRGFG    ++  E   A++ ++G++
Sbjct:  231 VYVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKM 396          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13
Identity = 51/162 (31.48%), Postives = 71/162 (43.83%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERA---------PRVVEP-GFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAI 872
            KLFVG L +    E L   F + G V    ++ ++ T++SRGFGFV           V     + +DGR +      PRG QPER          PR       +I+VG +P       L + F + G V    + YD E  R RGFG  T   E  ++ A+
Sbjct:   11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFG 830
            KLF+G L        L   FE  GT+    V+ N +T RSR FGFVT S VEEA+ A+     + +DG  + + +A  R  +    P       +++VG L  +V    L + FS+ G V  A +  D+++G+ RGFG
Sbjct:    8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSR--EDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFG 142          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  417 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMS---TVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGF 827
            KLF+G L Y    + L   FEK G +    V+ + +T RSRGFGF+T S    ++ A+ A      + IDGR +   +A PR  Q   +P       +++VG L  + D   L + F + G++V+  +  D++TG+ RGF
Sbjct:   25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA----RPHKIDGRTVEPKRAVPR--QEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGF 158          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 44/156 (28.21%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDG 887
            L V  LP ++  ++L  LF   G VE A++I ++    S G+GFV     ++AE+A+   +   +  + + V+ A P     + A         +Y+  LP  +    +E +F   G ++N+RV  D+ TG SRG         +E  +AIA+ +G
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDA--------NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 47/172 (27.33%), Postives = 89/172 (51.74%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRIWMGE 905
            +++ NL  ++  ++ + LF + G +    ++ + + D+ RGFGFV  +  E A+KAV+  +  +  G+ L V +A  +  + E   +  E           G  +++ NL  EVD+ RL+  FS  G + +A++  D E G+S+GFG     +  E N A+  ++ R+  G+
Sbjct:  263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            DA ++VG L   V    L  LF +AG V    +  +R T + +G+GFV   + E+A+ A+++ +   + G+ + VNKA+          + ++ G  I++GNL  E+D   L   FS  G ++   ++  D +TG S+G+     AS    + AI A++G+
Sbjct:   12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-------KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            DA ++VG L   V    L  LF +AG V    +  +R T + +G+GFV   + E+A+ A+++ +   + G+ + VNKA+          + ++ G  I++GNL  E+D   L   FS  G ++   ++  D +TG S+G+     AS    + AI A++G+
Sbjct:   12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-------KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  411 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVEPGFRIYVGNLPWEVDNARLEQVFSEHGKVVNA-RVXYDRETGRSRGFGLXTMASETELNDAIAALDGR 890
            DA ++VG L   V    L  LF +AG V    +  +R T + +G+GFV   + E+A+ A+++ +   + G+ + VNKA+          + ++ G  I++GNL  E+D   L   FS  G ++   ++  D +TG S+G+     AS    + AI A++G+
Sbjct:   12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHN-------KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 165          
BLAST of EY659746 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = 3
Query:  420 LFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYDIDGRLLTVNKAAPRGTQPERAPRVVE----------PGFRIYVGNLPWEVDNARLEQVFSEHGKVVNARVXYDRETGRSRGFGLXTMASETELNDAIAALDGRI 893
            ++  N+  +V  ++   LF K G +    V+   E  +S+GFGFV      EA+KAV+  H  D  G+ L V +A  +  + E   R  E           G  +Y+ N+P   D+ RL + F+  G + + ++     +G SRGFG    ++  E N A++ ++G++
Sbjct:  229 VYAKNVDPEVTDDEFEKLFTKFGKITSC-VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKI-MRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKM 394          
The following BLAST results are available for this feature:
BLAST of EY659746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
PABP3_ARATH1.658e-1329.17Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
DAZP1_HUMAN1.658e-1331.48DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]
ROA0_HUMAN2.165e-1334.78Heterogeneous nuclear ribonucleoprotein A0 OS=Homo... [more]
RB87F_DROME2.165e-1333.57Heterogeneous nuclear ribonucleoprotein 87F OS=Dro... [more]
ELV1B_XENLA2.165e-1328.21ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
PABP_SCHPO2.828e-1327.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
SF3B4_RAT3.693e-1329.81Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE3.693e-1329.81Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN3.693e-1329.81Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
PABP_USTMA3.693e-1327.98Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659746 ID=EY659746; Name=EY659746; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGTCTATCTTCGCCCGAAACCCATATTTCTCTATCCACCCC
AGACCCAGACCTATCAAGCTTCACCTTTCCGACTCCTCCTTATCTTCGAA
AGGTTTCTCCTTTAAGCTCAAAAAAACTATCCATTTCTCTTCATTCACGA
CTTTCGTTGCCCAAACGTCGGACTGGGCCGACCAAGAAGAAGACAAAGAC
AACACCACCATCACTCTTGAACAAGAACAAGAAGAGAATGGGGAAGAAGA
ACCGAATTGGGAAAATCAAGGAGCCGATGAAACTGAAGGGAATTTATCTG
ATTGGGGGGAACCCGAAGGCGAAGACACAGTTGTTGAGGCTGGTGAAAGG
CAGGAGGAGAGTGGTGAAGAGGGCGTTTTTCAGGAAGAGGAATTTGTGGA
ACCACCTGAGGATGCTAAGTTGTTTGTTGGGAACTTGCCCTATGATGTTG
ATAGTGAAAAGCTTGCTATGCTTTTTGAGAAGGCTGGAACTGTCGAGATT
GCCGAGGTTATTTACAACAGGGAGACTGACCGGAGTCGTGGCTTTGGGTT
CGTGACAATGAGTACTGTTGAGGAAGCTGAAAAGGCTGTGGAAATGTTTC
ACAGATATGACATAGATGGAAGGCTTTTGACGGTAAATAAAGCTGCTCCA
AGAGGAACACAGCCTGAACGCGCCCCTCGTGTGGTTGAGCCTGGTTTTAG
AATCTATGTGGGCAACCTGCCATGGGAAGTGGATAATGCTCGTCTAGAGC
AAGTTTTTAGTGAGCATGGTAAGGTGGTGAATGCCCGGGTTGNTTATGAC
AGGGAGACTGGACGTTCACGAGGNTTTGGGCTTGNTACAATGGCTAGTGA
GACTGAATTGAATGACGCAATTGCTGCTCTTGACGGACGAATCTGGATGG
GAGAGCATCAAAGAAATTT
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