EY659744

Overview
NameEY659744
Unique NameEY659744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:27..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.570e-11
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  545 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVA-HHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF--VWQGTCSVYHFMDEID 868
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA    + TF   S S L  K++GE  ++ + LF    +   S+  F+DEID
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSII-FIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.570e-11
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  545 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVA-HHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF--VWQGTCSVYHFMDEID 868
            P+  +  + GL+   + +KE + LPIK P LF   G   P +G+LL+GPPGTGK+ LA+AVA    + TF   S S L  K++GE  ++ + LF    +   S+  F+DEID
Sbjct:  129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSII-FIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.089e-11
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  512 PLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCT-FIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            PL+N  ++    D     I G +   + ++E + LP  +P LF   G+ QP +G+LL+GPPG GKTLLARAVA     T F+  S + L  K++G+  ++ R LF + +       F+DEID
Sbjct:  164 PLLN--EILNQDDVKMSDIIGAETAKRALEETVILPTVNPSLFS--GLRQPAQGILLFGPPGNGKTLLARAVAGECGSTMFLNVSAASLTSKWVGDAEKIVRALFQIARNGQPTIIFIDEID 281          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.952e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  548 DSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            D  +  + G ++   EI E +   +K+P+ ++ LG   PKG +L GPPGTGKTLLA+A A   +  FI  +GS   + ++G G    R +F        C +  F+DEID
Sbjct:  296 DVRFADVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCIL--FIDEID 402          
The following BLAST results are available for this feature:
BLAST of EY659744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
VPS4B_HUMAN3.570e-1140.18Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN3.570e-1140.18Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_BRUMA6.089e-1137.70Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
AFG31_MOUSE7.952e-1136.36AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659744 ID=EY659744; Name=EY659744; organism=Citrus sinensis; type=EST; length=940bp
TTTCGTCAACCCACGCGTCCGAGACTTGATTCGCAAGACAATTAGATTCG
AACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGCAATCGAA
ACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGG
AGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAACACATTC
ACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTC
GAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGA
ATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAG
TTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATAT
GTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAAC
AAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAA
GCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGAT
TCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAA
GGAGGTCATTGAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTG
GAATAGCTCAACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGC
AAAACACTGTTGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCAT
CAGGGGTTCTGGGTCTGGATTAGGCCAGAAATACATTGGAGAAGGCTCCA
GAATGTTTAGAAAACTTTTTGTATGGCAAGGGACATGCTCCGTCTATCAT
TTTATGGATGAAATTGACGGATTCGATCTGCCCGAATGAATTCTGCCACC
GAAATGGGGACAGGGAGGGCCAAAGACTTGCCGGACCTCC
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