EY659744

Overview
NameEY659744
Unique NameEY659744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:27..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.700e-37
Identity = 87/201 (43.28%), Postives = 120/201 (59.70%), Query Frame = 2
Query:  287 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIR  GS L QKY+GEG+RM R+LF     +  C V  F DE+D
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV--FFDEVD 271          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.700e-37
Identity = 87/201 (43.28%), Postives = 120/201 (59.70%), Query Frame = 2
Query:  287 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ TD  FIR  GS L QKY+GEG+RM R+LF     +  C V  F DE+D
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIV--FFDEVD 271          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.220e-37
Identity = 93/206 (45.15%), Postives = 123/206 (59.71%), Query Frame = 2
Query:  266 ELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            +L S  +M++EE  LL      V    +++  N    K +V +   GKYVV               RV +    Y + + LP K+DP V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+ HPE F  LGI  PKGVL YGPPG+GKTL+ARAVA+ T   FIR  GS L QKYIGEG+RM R+LF + +   +   F DEID
Sbjct:  109 DLVSDKQMMQEEQPLL------VATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEID 308          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 2.220e-37
Identity = 94/258 (36.43%), Postives = 143/258 (55.43%), Query Frame = 2
Query:  104 KQPESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            ++P    PE+    K  ++     ++  L+H      Q++Q+  N+  LE   ++  +       +++ LQ  G  +GEV+K + + K +VK     +Y+V               RV L   +  +  ILP + DPLV  M   +  + T+D IGGL +QI+E++EVIELP+K+PE+F+ +GI  PKGVLLYGPPGTGKTLLA+AVA      FI    SG+  KYIGE +R+ R++F +      C +  FMDE+D
Sbjct:   41 EEPSRVDPEQEAHNKALNQ----FKRKLLEH-RRYDDQLKQRRQNIRDLEKLYDKTEN-------DIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCII--FMDEVD 284          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.900e-37
Identity = 86/222 (38.74%), Postives = 131/222 (59.01%), Query Frame = 2
Query:  206 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T+ TFIR  GS L QKYIG+GS++ R++F + +       F+DE+D
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELD 262          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.900e-37
Identity = 95/240 (39.58%), Postives = 134/240 (55.83%), Query Frame = 2
Query:  185 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVWQGT---CSVYHFMDEID 868
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HPE F +LGI  PKGVLL+GPPGTGKTL ARAVA+ TD  FI   GS L QKY+GEG+RM R+LF    T   C +  F DEID
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLI--FFDEID 278          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 4.947e-37
Identity = 86/222 (38.74%), Postives = 131/222 (59.01%), Query Frame = 2
Query:  206 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T+ TFIR  GS L QKYIG+GS++ R++F + +       F+DE+D
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELD 262          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.947e-37
Identity = 92/242 (38.02%), Postives = 137/242 (56.61%), Query Frame = 2
Query:  152 ASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            A ++   +  Y  + +H  +L+ R +T   N L A + E N      +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++   S +  KYIGE +R+ R++F +      C +  FMDEID
Sbjct:    8 ARRRTAAVTDYRKKLLHHKELESRVRTAREN-LRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCII--FMDEID 242          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 6.460e-37
Identity = 83/173 (47.98%), Postives = 107/173 (61.85%), Query Frame = 2
Query:  359 KNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVWQGT---CSVYHFMDEID 868
            KN  ++ +    K+VV               RV    + Y + L LP K+DP V +M+VE+ PD TY  +GG  +QI+ ++EV+ELP+  PE F  LGI  PKG++LYGPPGTGKTL ARAVA+ TD TFIR  GS L QKY+GEG+RM R+LF    T   C +  F DEID
Sbjct:  112 KNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACII--FFDEID 282          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.460e-37
Identity = 102/264 (38.64%), Postives = 143/264 (54.17%), Query Frame = 2
Query:   98 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+R  GS L QKY+G+G ++ R+LF V +       F+DEID
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288          
The following BLAST results are available for this feature:
BLAST of EY659744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
PRS7_ORYSJ1.700e-3743.2826S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7A_ARATH1.700e-3743.2826S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7B_ARATH2.220e-3745.1526S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS10_YEAST2.220e-3736.4326S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_METMA2.900e-3738.74Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS7_RAT2.900e-3739.5826S protease regulatory subunit 7 OS=Rattus norveg... [more]
PSMR_METAC4.947e-3738.74Proteasome-activating nucleotidase OS=Methanosarci... [more]
PS10B_ARATH4.947e-3738.0226S protease regulatory subunit S10B homolog B OS=... [more]
PRS7_SCHPO6.460e-3747.9826S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS4_RAT6.460e-3738.6426S protease regulatory subunit 4 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659744 ID=EY659744; Name=EY659744; organism=Citrus sinensis; type=EST; length=940bp
TTTCGTCAACCCACGCGTCCGAGACTTGATTCGCAAGACAATTAGATTCG
AACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGCAATCGAA
ACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGG
AGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAACACATTC
ACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTC
GAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGA
ATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAG
TTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATAT
GTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAAC
AAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAA
GCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGAT
TCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAA
GGAGGTCATTGAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTG
GAATAGCTCAACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGC
AAAACACTGTTGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCAT
CAGGGGTTCTGGGTCTGGATTAGGCCAGAAATACATTGGAGAAGGCTCCA
GAATGTTTAGAAAACTTTTTGTATGGCAAGGGACATGCTCCGTCTATCAT
TTTATGGATGAAATTGACGGATTCGATCTGCCCGAATGAATTCTGCCACC
GAAATGGGGACAGGGAGGGCCAAAGACTTGCCGGACCTCC
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