EY659744

Overview
NameEY659744
Unique NameEY659744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:27..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.460e-37
Identity = 102/264 (38.64%), Postives = 143/264 (54.17%), Query Frame = 2
Query:   98 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+R  GS L QKY+G+G ++ R+LF V +       F+DEID
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.460e-37
Identity = 102/264 (38.64%), Postives = 143/264 (54.17%), Query Frame = 2
Query:   98 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+R  GS L QKY+G+G ++ R+LF V +       F+DEID
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 288          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 8.438e-37
Identity = 93/233 (39.91%), Postives = 133/233 (57.08%), Query Frame = 2
Query:  173 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            L+   L+ I +  +   +   N  RL+ Q +E N   R   ++L+    P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DP+V +MK+EK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T  TF+R  GS L QKY+G+G ++ R+LF V +       F+DEID
Sbjct:   59 LKLLKLERIKDYLMMEDEFIRNQERLKPQ-DEKNEEERSKVDDLR--GTPMS-VGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 287          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.102e-36
Identity = 89/233 (38.20%), Postives = 138/233 (59.23%), Query Frame = 2
Query:  173 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVWQGTCS-VYHFMDEID 868
            L+Q  L+ I +  L  ++   N +  + + +E NS+ +  ++ ++ L+     VG + +++  N  +V      ++ V                V L N +  +  ++  +VDP+VN+MKVEK P  +Y  IGGL+ Q++E+KE IELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T  TF+R  GS L QKY+G+G ++ R+LF     C+    F+DEID
Sbjct:   56 LKQLKLERIKDYLLMEQEFLQNYDLNQPKVDE-NSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEID 287          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.439e-36
Identity = 92/234 (39.32%), Postives = 134/234 (57.26%), Query Frame = 2
Query:  176 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLFVW---QGTCSVYHFMDEID 868
            R+  LQH  EL+ +VR    NL   + + N+        +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTLLARA+A + D  F++   S +  KYIGE +R+ R++F +      C +  FMDEID
Sbjct:   19 RKKLLQH-KELESRVRTARENLRGAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCII--FMDEID 242          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.880e-36
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 2
Query:  203 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI    S   QK++GEG+R+ R+LF + +       F+DEID
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.880e-36
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 2
Query:  203 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI    S   QK++GEG+R+ R+LF + +       F+DEID
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.880e-36
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 2
Query:  203 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI    S   QK++GEG+R+ R+LF + +       F+DEID
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.880e-36
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 2
Query:  203 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI    S   QK++GEG+R+ R+LF + +       F+DEID
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEID 237          
BLAST of EY659744 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.880e-36
Identity = 86/223 (38.57%), Postives = 126/223 (56.50%), Query Frame = 2
Query:  203 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRGSGSGLGQKYIGEGSRMFRKLF-VWQGTCSVYHFMDEID 868
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QIKE++EV+ELP+K PE+F  +G+  PKGVLLYGPPGTGKT+LA+AVA  ++  FI    S   QK++GEG+R+ R+LF + +       F+DEID
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEID 237          
The following BLAST results are available for this feature:
BLAST of EY659744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
PRS4_MOUSE6.460e-3738.6426S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN6.460e-3738.6426S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME8.438e-3739.9126S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_DICDI1.102e-3638.2026S protease regulatory subunit 4 homolog OS=Dicty... [more]
PS10A_ARATH1.439e-3639.3226S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR_SULIY1.880e-3638.57Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.880e-3638.57Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM1.880e-3638.57Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL1.880e-3638.57Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK1.880e-3638.57Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659744 ID=EY659744; Name=EY659744; organism=Citrus sinensis; type=EST; length=940bp
TTTCGTCAACCCACGCGTCCGAGACTTGATTCGCAAGACAATTAGATTCG
AACAAATCGAACTCGTTCACTCGGAAAGAATGGCCGCTGTAGCAATCGAA
ACGAAGCAGCCGGAATCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGG
AGCATCGAAACAAGGAGAGGGATTGAGGCAATACTACCTCCAACACATTC
ACGAACTCCAGCTCCAAGTCCGTCAAAAAACCCACAATCTCAATCGCCTC
GAAGCCCAGCGTAACGAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGA
ATTACAGCTTCTTCAAGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAG
TTATGGGAAAAAATAAGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATAT
GTTGTTGATATTGATAAAAGTATTGATATAACCAAGATCACTCCGTCAAC
AAGAGTTGCACTTCGTAATGACAGCTATGTTCTTCATTTGATCCTGCCAA
GCAAAGTAGATCCCCTGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGAT
TCTACATATGACATGATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAA
GGAGGTCATTGAGCTTCCTATCAAACATCCCGAATTGTTCGAGTCTCTTG
GAATAGCTCAACCCAAGGGTGTATTGCTATATGGACCACCTGGTACTGGC
AAAACACTGTTGGCTAGAGCTGTGGCTCATCATACTGATTGTACTTTCAT
CAGGGGTTCTGGGTCTGGATTAGGCCAGAAATACATTGGAGAAGGCTCCA
GAATGTTTAGAAAACTTTTTGTATGGCAAGGGACATGCTCCGTCTATCAT
TTTATGGATGAAATTGACGGATTCGATCTGCCCGAATGAATTCTGCCACC
GAAATGGGGACAGGGAGGGCCAAAGACTTGCCGGACCTCC
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