EY659741

Overview
NameEY659741
Unique NameEY659741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: GEFL_DICDI (Ras guanine nucleotide exchange factor L OS=Dictyostelium discoideum GN=gefL PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.911e-13
Identity = 59/205 (28.78%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIV-RLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLP----KLPC-NLLSLDAHHCTALESLP 674
            ++LD       PS +  L KL+ LG ++   LKS+P+ + ++  L  LI+ G + ++ +P E+ NL++L  L      ++ +P  +  +L ++  ++   NK  S+P    +   Q+L  L LN+  I  LP+S+G L ++  L+L+ N    +P  +    +L++L++ +  +L +LP    +L C N+LSL   H   L+ LP
Sbjct:  144 LYLDENQFSNFPSHLCELQKLTTLGFSN-NLLKSIPTQIGQMIGLKKLILSG-NQMESIPMEISNLKSLTHLDCSSNILSSIPNELGNKLSQLSFLFLQHNKLRSIPD--EIGQCQSLVSLRLNNNSITLLPQSIGELENLQELYLQENRLNTLPSELGNCCSLKKLYLEF-NKLIALPDRFKRLHCLNVLSL---HDNLLDDLP 340          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRRC1_MOUSE (Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.671e-13
Identity = 60/198 (30.30%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  105 ELPSSIECLSKLSHLGLADCKS--LKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPK-----LPCNLLSLDAHHCTALESLPG 677
            ++P   E ++    L +AD     L  LP    +L++L  L ++  S LQ LPE +GNL  L  L      +T +P S+ +L+R+  +  G N+  +LP   S+  L +L+DL L+   + ELP+ +G L ++  L +  N  ER+P+ I  L++L  L I     L+++P+        ++L LD +  T L    G
Sbjct:   93 DIPEIPESIAFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDIS-LQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPE--SIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQ-NLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIG 286          

HSP 2 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 54/164 (32.93%), Postives = 72/164 (43.90%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERL 575
            LD   L ELP     L KL  LGL+D                         + +QRLP E+ N   L  L      I E+P SI   K ++   F  N    LP +F    LQNL  L++ND  +  LPE++G L ++ +L L  N    +P S+ QL  LE L
Sbjct:   43 LDANQLRELPEQFFQLVKLRKLGLSD-------------------------NEIQRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGNPLTRLPESFPE--LQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEEL 179          

HSP 3 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 62/204 (30.39%), Postives = 99/204 (48.53%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLPGLFPSSD 695
            LDG  L ELP  I  L  L  L +++ + L+ LP  +  L SL  L+I   + L+ +PE +G L+ L IL      +T++P +I   + +  +    N+ L+LP   S+  L+ L +LN +   ++ LP+ +G   S+T   +  N   R+P  + Q   L  L +    RL  LP L    L L A   +  +S P L   +D
Sbjct:  204 LDGNQLSELPQEIGNLKNLLCLDVSENR-LERLPEEISGLTSLTYLVISQ-NLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTENRLLTLPK--SIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTMFCIRDNRLTRLPAEVSQAVELHVLDVA-GNRLHHLP-LSLTTLKLKALWLSDNQSQPLLTFQTD 401          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC69_XENLA (Leucine-rich repeat-containing protein 69 OS=Xenopus laevis GN=lrrc69 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.671e-13
Identity = 55/181 (30.39%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLP---SGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLP 611
            ++L+G  L+ +P ++ CL  L+ L L +   L  LP   S LC+L+ L +    G ++ +++PEE+  L+ L+ LH  G  I+E+P +                        ++DGL NL  LNLN+  +  LP  +  L S+ TL +  N+ + IP+ +  L NL+ L +    +L SLP
Sbjct:   17 LNLNGKRLQRVPVAVGCLISLTELQLKN-NLLCRLPVELSALCRLRVLHL----GNNHFEKVPEEIKYLKCLERLHLFGNRISEIPAA------------------------ALDGLDNLLFLNLNNNLLEHLPREIYKLQSLETLSINNNHMKAIPKELCFLQNLQELHLAN-NQLDSLP 167          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRIQ4_HUMAN (Leucine-rich repeat and IQ domain-containing protein 4 OS=Homo sapiens GN=LRRIQ4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.713e-13
Identity = 55/187 (29.41%), Postives = 85/187 (45.45%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 638
            ++L  T L  L  S  CL  L  L L+    L   P  +C LK+L+VL +D  + + +LP ELG+L  L IL   G      P  ++ L  +  +Y G+++G  L                        +PE +  L S+  L++E N+ E +P S+  + NLE L  R+   L+ LP   C   +L
Sbjct:  285 LYLGNTGLHRLRGSFRCLVNLRFLDLSQ-NHLHHCPLQICALKNLEVLGLDD-NKIGQLPSELGSLSKLKILGLTGNEFLSFPEEVLSLASLEKLYIGQDQGFKLTY----------------------VPEHIRKLQSLKELYIENNHLEYLPVSLGSMPNLEVLDCRH-NLLKQLPDAICQAQAL 446          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: YG015_MACFA (Leucine-rich repeat and death domain-containing protein LOC401387 homolog OS=Macaca fascicularis GN=QtsA-18164 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-12
Identity = 56/233 (24.03%), Postives = 103/233 (44.21%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSL----------------------KSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITF------------------------SVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 638
            + ++G  + E+P+ I    +L HL L++ K L                      K +P+ +  + SL VLI+  C+  +  P EL  LE L +L      + ++   I  LKR++ + F  N+ +  PI                           +  +  L++L++++  I E+P ++G L ++ +LH   N    IP S++ L++L++L +     L +LP    NL SL
Sbjct:  495 LSVNGNYISEIPADISFSKQLLHLELSENKLLIFSEHFCSLINLKYLDLGKNQIKKIPASISNMISLHVLILC-CNKFETFPRELCTLENLRVLDLSENQLQKISSDICNLKRIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYIPPSLLSLNDLQQLNLS-GNNLTALPSAIYNLFSL 725          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: MFHA1_MOUSE (Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Mus musculus GN=Mfhas1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-12
Identity = 52/163 (31.90%), Postives = 84/163 (51.53%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNL 566
            + +    L  LP  I  L  L  L L+  + L +LP G C+L SL+ L++D  + LQ LP+E   L+ L +L+       E P +++ L  +  +Y  RN+  S+P    + GL  L  L L++  I  LP+S+  L+ +  L L+GN    +P +  QLS +
Sbjct:  205 LDVSSNRLRGLPEDISALRALKILWLSGAE-LGTLPRGFCELASLESLMLDN-NGLQALPDEFSRLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSL--IAGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDNFGQLSRV 363          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC8D_RAT (Leucine-rich repeat-containing protein 8D OS=Rattus norvegicus GN=Lrrc8d PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-12
Identity = 55/169 (32.54%), Postives = 90/169 (53.25%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEEL---GNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERL 575
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L  D  SN  R  EE+    +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP+  +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  618 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQEL--DLKSNSIRTIEEIISFQHLKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESLPV--AVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLHITGNKVDVLPKQLFKCVKLRTL 780          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LAP4_DROME (Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.941e-12
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 3
Query:   99 LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQL 557
            LEELP+ I  L  L+ L LA    L++LP G+ KL  L +L +D  + LQRL + LGN E +  L      ++E+P SI ++ ++  +   RN    LP+   +    NL  L+L D  + +LP  LG  + +  L + GN    +P S++ L
Sbjct:  233 LEELPNEISGLVSLTDLDLAQ-NLLEALPDGIAKLSRLTILKLDQ-NRLQRLNDTLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALEYLPL--EIGQCANLGVLSLRDNKLKKLPPELGNCTVLHVLDVSGNQLLYLPYSLVNL 381          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC8D_HUMAN (Leucine-rich repeat-containing protein 8D OS=Homo sapiens GN=LRRC8D PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.535e-12
Identity = 51/168 (30.36%), Postives = 91/168 (54.17%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG--NLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERL 575
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L +   +N++ + E +   +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP+  +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  618 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQELDLKS-NNIRTIEEIISFQHLKRLTCLKLWHNKIVTIPPSITHVKNLESLYFSNNKLESLPV--AVFSLQKLRCLDVSYNNISMIPIEIGLLQNLQHLHITGNKVDILPKQLFKCIKLRTL 780          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC69_MOUSE (Leucine-rich repeat-containing protein 69 OS=Mus musculus GN=Lrrc69 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.324e-12
Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVR-LKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 638
            L+G  + ++PS++E L  L  L L +    K  P  L  L  L +L + G ++LQ +PEE+  L +L  LH  G  I  + P +   L R+  +    N+  SLP    +  L++L  L+LN   +  +P+ L  L  ++ LHL  N    IP+ I  L NL++LF+     ++ LP+  C+L  L
Sbjct:   21 LNGKRITKMPSTLEKLPNLKTLDLQNNSISKVCPE-LRTLTQLTLLNL-GNNHLQEVPEEIKYLTSLKNLHLFGNRICRIAPGVFNGLHRLIMLNLNDNRLTSLPQ--EIGRLRSLTYLSLNRNNLTVIPKELCSLEHLSELHLNYNQIVYIPEEIKFLKNLQQLFL-VRNNIEELPEEICHLEKL 201          
The following BLAST results are available for this feature:
BLAST of EY659741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GEFL_DICDI3.911e-1328.78Ras guanine nucleotide exchange factor L OS=Dictyo... [more]
LRRC1_MOUSE6.671e-1330.30Leucine-rich repeat-containing protein 1 OS=Mus mu... [more]
LRC69_XENLA6.671e-1330.39Leucine-rich repeat-containing protein 69 OS=Xenop... [more]
LRIQ4_HUMAN8.713e-1329.41Leucine-rich repeat and IQ domain-containing prote... [more]
YG015_MACFA1.486e-1224.03Leucine-rich repeat and death domain-containing pr... [more]
MFHA1_MOUSE1.486e-1231.90Malignant fibrous histiocytoma-amplified sequence ... [more]
LRC8D_RAT1.486e-1232.54Leucine-rich repeat-containing protein 8D OS=Rattu... [more]
LAP4_DROME1.941e-1233.99Protein lap4 OS=Drosophila melanogaster GN=scrib P... [more]
LRC8D_HUMAN2.535e-1230.36Leucine-rich repeat-containing protein 8D OS=Homo ... [more]
LRC69_MOUSE4.324e-1231.72Leucine-rich repeat-containing protein 69 OS=Mus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659741 ID=EY659741; Name=EY659741; organism=Citrus sinensis; type=EST; length=956bp
CATTTCCCCCCCAATGGTACCCTGCAGCACCGGTCCGGAATTCTTCGTAA
ACCGCGCGTCCGCGGTAATATTTCCCGATGCATTTAGATGGAACTGCACT
GGAGGAACTGCCTTCGTCCATCGAGTGTCTATCTAAGCTTTCGCACTTGG
GCCTTGCAGATTGTAAAAGTCTCAAGAGTCTCCCAAGCGGCCTGTGTAAG
TTGAAATCTCTAGATGTTCTCATTATCGATGGTTGCTCGAATCTTCAGAG
ATTGCCCGAGGAACTTGGAAATTTAGAAGCTTTGGATATTTTGCACGCTA
TAGGAACTTCTATAACAGAAGTACCGCCATCCATCGTCCGTTTGAAAAGG
GTTCGTGGAATATATTTCGGGAGAAACAAGGGTTTATCATTGCCAATCAC
ATTCTCTGTAGATGGCTTGCAAAATCTAAGGGATTTAAATCTAAATGATT
GCGGCATCATGGAGTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACA
ACACTGCATCTAGAGGGAAACAATTTTGAGAGAATACCACAAAGCATCAT
ACAACTTTCTAATTTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTC
AATCCTTACCAAAGCTTCCATGCAATCTACTTTCGTTGGATGCACATCAT
TGCACCGCACTGGAATCATTACCAGGTTTATTCCCAAGTAGTGATGAATC
TTATTTACGGACTTTATACCCTGAGCGATAATTTTAAATTGCATCGGAAT
GAGATTAGAGGAATTGCCCAAGGAGCTCCTGAAAAAATTCAACTTTTGGC
CACCCGCCCTCTAAAAGAACCACGGGAAAAGGATGTCCTTAATTAACTCT
CCTTTTTTATTAGAAACGAGCCTAAGAAAAACATGCCGCATGAACCATAC
CCCGGNGTGCGCAAATTAACGGTAATGGATAATCTGCCCTCTTTTTTTGA
CCCCAA
back to top