EY659741

Overview
NameEY659741
Unique NameEY659741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC8D_MOUSE (Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 51/168 (30.36%), Postives = 90/168 (53.57%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELG--NLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERL 575
            +H DGT L  L +S++ +  ++ L L +C+ L+ +P  +  L +L  L +   +N++ + E +   +L+ L  L      I  +PPSI  +K +  +YF  NK  SLP   +V  LQ LR L+++   I  +P  +GLL ++  LH+ GN  + +P+ + +   L  L
Sbjct:  619 IHNDGTKLLVL-NSLKKMMNVAELELQNCE-LERIPHAIFSLSNLQELDLKS-NNIRTIEEIISFQHLKRLTCLKLWHNKIVAIPPSITHVKNLESLYFSNNKLESLPT--AVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLHITGNKVDILPKQLFKCVKLRTL 781          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: MFHA1_HUMAN (Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.376e-12
Identity = 52/163 (31.90%), Postives = 83/163 (50.92%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNL 566
            + +    L  LP  I  L  L  L L+  + L +LP+G C+L SL+ L++D  + LQ LP +   L+ L +L+       E P +++ L  +  +Y  RN+  S+P   S  GL  L  L L++  I  LP+S+  L+ +  L L+GN    +P    QLS +
Sbjct:  209 LDVSSNRLRGLPEDISALRALKILWLSGAE-LGTLPAGFCELASLESLMLDN-NGLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLIS--GLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRV 367          

HSP 2 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 56/181 (30.94%), Postives = 85/181 (46.96%), Query Frame = 3
Query:   99 LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSLD 641
            L  LP S+ CLS+L  L + D   L + P  L +L +L+ L +   + L+ LPE++  L AL IL   G  +  +P     L  +  +    N   +LP  FS   LQ L+ LNL+     E P +L  L+ +  L+L  N    +P  I  L  L  L++    R++ LP     L  L+
Sbjct:  170 LAHLPDSLSCLSRLRTLDV-DHNQLTAFPRQLLQLVALEELDVSS-NRLRGLPEDISALRALKILWLSGAELGTLPAGFCELASLESLMLDNNGLQALPAQFSC--LQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDN-NRIRYLPDSIVELTGLE 345          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC40_XENTR (Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.634e-12
Identity = 63/198 (31.82%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLP 674
            L    LEELP SI  LS L  L +++   L+S+ S + +L  L    +   + L  LP E+G ++ L  L      +  VP S+  ++ +  +Y  +NK   LP    +  L  L++L++ +  I  L PE L  LSS++ L L  N  + +P+ I  L+ LERL +        L  LPC L SL       LE  P
Sbjct:  158 LQHNQLEELPDSIGHLSILEELDVSN-NCLRSISSSVGQLTGLVKFNLSS-NKLTALPTEIGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP---ELPFLTKLKELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSN----NDLGSLPCTLGSLPNLKSLQLEGNP 346          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LAP1_CAEEL (Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 9.634e-12
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIR 584
            + L    LE LP+ I  L+ L      D  SL SLP  +   + LD L +   + + RLPE LG +  L  L+     I E+P S   LKR++ +   RN   +L  T  +   Q+L +L L    + +LP+++G L  +TTL+++ NN   IP +I    +L  L +R
Sbjct:  179 LDLGQNELEALPAEIGKLTSLREF-YVDINSLTSLPDSISGCRMLDQLDVSE-NQIIRLPENLGRMPNLTDLNISINEIIELPSSFGELKRLQMLKADRNSLHNL--TSEIGKCQSLTELYLGQNFLTDLPDTIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLR 343          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: YG015_HUMAN (Leucine-rich repeat and death domain-containing protein LOC401387 OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.258e-11
Identity = 45/188 (23.94%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLP-ITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 638
            + L    ++++P+SI  +  L H+ +  C   ++ P  LC L++L VL +   + LQ++  ++ NL+ +  L+         P  + +L+ +  +   + KG  L  +   +  +  L++L++++  I E+P ++G L ++ +LH   N    +P S++ L++L++L +     L +LP    N+ SL
Sbjct:  538 LDLGKNQIKKIPASISNMISL-HVLILCCNKFETFPRELCTLENLQVLDLSE-NQLQKISSDICNLKGIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQQLNLS-GNNLTALPSAIYNIFSL 722          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: PIDD_HUMAN (Leucine-rich repeat and death domain-containing protein OS=Homo sapiens GN=LRDD PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 55/172 (31.98%), Postives = 90/172 (52.33%), Query Frame = 3
Query:   96 ALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLP 611
            AL  LP+ +  L+ L+HL L+   SL++LP+ + +++ L  L++   + L  LPE LG L AL  L      +  +PP++  L  ++ +   +N   +LP    + GL +L +LNL    +  LP SL  L S+  L L  N    +P  + +L  L RL +R   +L+ LP
Sbjct:  113 ALTNLPAGLSGLAHLAHLDLS-FNSLETLPACVLQMRGLGALLLSH-NCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPP--EIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLR-DNQLRDLP 279          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 65/220 (29.55%), Postives = 107/220 (48.64%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLP--KLPCNLLSLDAHHCTALESLPGLF----PSSDESYLRTLYP 722
            ++   ++++P  +   +K LS L + D   L SLP       SL  L +   + + +LPE++  L  L++L      + ++P  I  L+++R +    NK  S+P    ++ L++L  L L    +  LP S+G LSSVT L +  N    +PQ I  + +LE+L++   E LQSLP   + C  L + +     L +LP       PS    YLR   P
Sbjct:  348 MEHNRMQKIPFGVFNKAKYLSKLNVKD-NQLTSLPLDFGSWISLVELNV-ATNQISKLPEDIQWLVNLEVLILSNNLLKKLPRGIGALRKLRVLDIEENKLESIPT--EIEYLRSLERLVLQSNCLGSLPRSIGYLSSVTYLSVGENELVSVPQEIGNMESLEQLYLNDNENLQSLPYELVLCGSLQIMSIENCPLSALPSQIVAGGPSLVIQYLRLQGP 563          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 56/190 (29.47%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  153 LADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSN-----------------------LERLFIRYCERLQSLPKLPCNLLSLDAHHC 653
            L     L+S+P  +  L +L VL I   + L  LP+ +G+LE L  L      +TE+P  + RL  +R ++  +N  L   I   +  L NL +L+L++  ++++PESL  L ++  L L  N  + +P +I Q+ N                       LE+L++R+  +L+ LP+LPC   +L   HC
Sbjct:   86 LLSSNKLQSIPDDVKLLPALVVLDIHD-NQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRLTNLRCLHLQQN--LIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRH-NKLRYLPELPC-CKTLKELHC 270          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: LAP2_HUMAN (Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 3
Query:   78 MHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPQSIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLPGLFPSSDESYLRTLYPE 725
            ++L+   LE LP++   L+KL  L L +   LK LP  + +L  L+ L + G +    +PE L  L  L         +T +P  I  LK++   Y   +K     +   +   +NL+DL L+   + +LPE++G L ++TTL ++ N    +P SI  L ++E L   + E +++LP     L +L                ++D +YL+ L PE
Sbjct:  143 LYLNDAFLEFLPANFGRLTKLQILELRE-NQLKMLPKTMNRLTQLERLDL-GSNEFTEVPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLT--YLDVSKNNIEMVEEGISTCENLQDLLLSSNSLQQLPETIGSLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNE-VEALPSSIGQLTNLRTF-------------AADHNYLQQLPPE 340          
BLAST of EY659741 vs. ExPASy Swiss-Prot
Match: POPC_RALSO (Protein popC OS=Ralstonia solanacearum GN=popC PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 63/205 (30.73%), Postives = 104/205 (50.73%), Query Frame = 3
Query:   84 LDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGN-NFERIPQSIIQLSNLERLFIRYCERLQSLPKL----PCNLLSLDAHHCTALESLPGLF 683
            ++ + LE+LP+    L +L+ L L++ K L+ L SG+ +L +L  L +     L+RLP+ LG +E L +   IG  I  + PS   +  ++ +    +    LP  F    L NL  ++L++  + +LP S+G L ++ TL L+ N     +P S  QLS L+ L +    R+  LP +        L++D    TAL  LP  F
Sbjct:  300 IEDSPLEQLPAGFADLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERLPKSLGQVEELTL---IGGRIHAL-PSASGMSSLQKLTVDNSSLAKLPADFG--ALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLN-GNRIHELPSMGGASSLQTLTVDD---TALAGLPADF 493          
The following BLAST results are available for this feature:
BLAST of EY659741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LRC8D_MOUSE5.648e-1230.36Leucine-rich repeat-containing protein 8D OS=Mus m... [more]
MFHA1_HUMAN7.376e-1231.90Malignant fibrous histiocytoma-amplified sequence ... [more]
LRC40_XENTR9.634e-1231.82Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
LAP1_CAEEL9.634e-1232.54Protein lap1 OS=Caenorhabditis elegans GN=let-413 ... [more]
YG015_HUMAN1.258e-1123.94Leucine-rich repeat and death domain-containing pr... [more]
PIDD_HUMAN1.643e-1131.98Leucine-rich repeat and death domain-containing pr... [more]
SHOC2_NEMVE3.661e-1129.55Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
LRC40_DANRE3.661e-1129.47Leucine-rich repeat-containing protein 40 OS=Danio... [more]
LAP2_HUMAN3.661e-1128.24Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2[more]
POPC_RALSO4.781e-1130.73Protein popC OS=Ralstonia solanacearum GN=popC PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659741 ID=EY659741; Name=EY659741; organism=Citrus sinensis; type=EST; length=956bp
CATTTCCCCCCCAATGGTACCCTGCAGCACCGGTCCGGAATTCTTCGTAA
ACCGCGCGTCCGCGGTAATATTTCCCGATGCATTTAGATGGAACTGCACT
GGAGGAACTGCCTTCGTCCATCGAGTGTCTATCTAAGCTTTCGCACTTGG
GCCTTGCAGATTGTAAAAGTCTCAAGAGTCTCCCAAGCGGCCTGTGTAAG
TTGAAATCTCTAGATGTTCTCATTATCGATGGTTGCTCGAATCTTCAGAG
ATTGCCCGAGGAACTTGGAAATTTAGAAGCTTTGGATATTTTGCACGCTA
TAGGAACTTCTATAACAGAAGTACCGCCATCCATCGTCCGTTTGAAAAGG
GTTCGTGGAATATATTTCGGGAGAAACAAGGGTTTATCATTGCCAATCAC
ATTCTCTGTAGATGGCTTGCAAAATCTAAGGGATTTAAATCTAAATGATT
GCGGCATCATGGAGTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACA
ACACTGCATCTAGAGGGAAACAATTTTGAGAGAATACCACAAAGCATCAT
ACAACTTTCTAATTTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTC
AATCCTTACCAAAGCTTCCATGCAATCTACTTTCGTTGGATGCACATCAT
TGCACCGCACTGGAATCATTACCAGGTTTATTCCCAAGTAGTGATGAATC
TTATTTACGGACTTTATACCCTGAGCGATAATTTTAAATTGCATCGGAAT
GAGATTAGAGGAATTGCCCAAGGAGCTCCTGAAAAAATTCAACTTTTGGC
CACCCGCCCTCTAAAAGAACCACGGGAAAAGGATGTCCTTAATTAACTCT
CCTTTTTTATTAGAAACGAGCCTAAGAAAAACATGCCGCATGAACCATAC
CCCGGNGTGCGCAAATTAACGGTAATGGATAATCTGCCCTCTTTTTTTGA
CCCCAA
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