EY659738

Overview
NameEY659738
Unique NameEY659738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659738 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   10 RNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWIAKAEYDESG 225
            ++IVLSGG+TM+PG+  R+ KE+  L           A    KI++ APP RK+ V++GG++LA+L     Q  W++K EY+E G
Sbjct:  297 KHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 381          
BLAST of EY659738 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   16 IVLSGGSTMFPGIADRMSKEITALAPS----SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIV 237
            +VL+GGST+FPG  +RM+ E+ A        +++  +VA P R  +VW GGS++ASL++FQ  W+ +A Y E GP +V
Sbjct:  264 VVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLV 341          
BLAST of EY659738 vs. ExPASy Swiss-Prot
Match: CT134_HUMAN (Putative uncharacterized actin family protein C20orf134 OS=Homo sapiens GN=C20orf134 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   16 IVLSGGSTMFPGIADRMSKEITALAP----SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVH 240
            +VL+GGST+FPG A+R+ KE+ A       ++++  +VA   R  +VW GGS++ASL +FQ+ WI +A Y E G  +++
Sbjct:  163 VVLAGGSTLFPGFAERLDKELEAQCRRHGYAALRPHLVAKHGRGMAVWTGGSMVASLHSFQRRWITRAMYQECGSRLLY 241          
BLAST of EY659738 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   10 RNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 252
            ++I+L+GGST+FP + +R+  E+  L P    +K+    +    VW GGS+LAS   F+ M + KAEY+E G +   R+ F
Sbjct:  340 QSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420          
BLAST of EY659738 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   13 NIVLSGGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSI 234
            NIVLSGGSTMF   A ++ +++  L+                P  + ++V++   ++Y+VW GGS+LAS S F Q+  +KAEY E GPSI
Sbjct:  326 NIVLSGGSTMFKDFARKLQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHSKAEYMEKGPSI 415          
The following BLAST results are available for this feature:
BLAST of EY659738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
ARP2_CAEBR1.383e-1141.18Actin-related protein 2 OS=Caenorhabditis briggsae... [more]
CT134_MOUSE1.806e-1143.59Putative uncharacterized actin family protein C20o... [more]
CT134_HUMAN1.806e-1141.77Putative uncharacterized actin family protein C20o... [more]
ARP6_ARATH1.806e-1138.27Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP3_CAEBR6.864e-1140.00Actin-related protein 3 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659738 ID=EY659738; Name=EY659738; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGCAATATTGTCCTTAGTGGTGGCTCCACCATGTTCCCAGG
TATTGCTGATAGAATGAGCAAGGAGATCACTGCATTGGCTCCAAGTAGCA
TGAAGATCAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATA
GGAGGCTCGATATTGGCTTCCCTCAGCACCTTCCAGCAGATGTGGATCGC
AAAGGCAGAATATGATGAGTCTGGACCATCAATTGTCCACAGAAAATGCT
TCTAATCGTGGAAAGAGAAATGCAATGAGGAAACATATACCAGACATTTT
GTATTAAGGAAAGGCTTCTTCCAATCAAGCGGTTGTTCGAAGTTTCTTTT
TTCTCATCCTTTTCGTTCTTGTTTCTTTTTCGTGTTTTCGTCCTTTGATG
TCTGAACAATGAATATGGGGGGATTCAATTCTTTACATTATTATTTGTTA
GTAGAAGAGTATTGGATTGTTAAAAAAAAAAAAAAAAAAAAA
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