EY659723

Overview
NameEY659723
Unique NameEY659723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659723_ssr25 microsatellite EY659723_ssr25:25..36. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.864e-33
Identity = 92/213 (43.19%), Postives = 120/213 (56.34%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVXGAEYYRITNG-LDFG-DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+   E YR+  G L  G DK++PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     H++DP A  A
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNA 254          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.434e-33
Identity = 91/210 (43.33%), Postives = 118/210 (56.19%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNG-LDFG-DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRTC-*HLSDPFATTA 878
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+   E YR+  G L  G DK++PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     H++DP A  A
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNA 254          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.434e-33
Identity = 82/184 (44.57%), Postives = 107/184 (58.15%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF 806
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I    + A+ A +++L+   E YRI  G   +  D ++PGG FDPLGLA     FA LK KE++ G L  F+  G F
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 226          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.179e-33
Identity = 91/211 (43.13%), Postives = 115/211 (54.50%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGLDFG---DKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G   G   D L+PGG FDPLGLA     FA LK KEI+ G L  F+  G F   L   +G +     HL+DP    A
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNA 255          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.179e-33
Identity = 89/210 (42.38%), Postives = 116/210 (55.24%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+   E YRI  G   +  D L+PGG FDPLGLA     F  LK KE++ G L   +  G F   +   +G +     H++DP    A
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNA 254          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.152e-33
Identity = 89/210 (42.38%), Postives = 114/210 (54.29%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRTC-*HLSDPFATTA 878
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+   E YR+  G   +  D ++PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL+DP A  A
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNA 257          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.152e-33
Identity = 88/210 (41.90%), Postives = 114/210 (54.29%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G   +  D L+PGG FDPLGLA     FA LK K I+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.082e-33
Identity = 88/210 (41.90%), Postives = 114/210 (54.29%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G   +  D L+PGG FDPLGLA     FA LK KEI+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 256          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.082e-33
Identity = 88/210 (41.90%), Postives = 114/210 (54.29%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+   E YR+  G   +  D L+PGG FDPLGLA     FA L+ KEI+ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 255          
BLAST of EY659723 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.208e-32
Identity = 84/210 (40.00%), Postives = 115/210 (54.76%), Query Frame = 3
Query:  270 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVXGAEYYRITNGL--DFGDKLHPGGPFDPLGLAXGS*QFALLKXKEIRMGDLPWFACLGSF-SRLCHSEGQVRT-C*HLSDPFATTA 878
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++     +++L+   E YR+  G   +  D L+PGG FDPLGLA    + A LK KE++ G L  F+  G F   +   +G +     HL+DP    A
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 253          
The following BLAST results are available for this feature:
BLAST of EY659723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB24_SOLLC1.864e-3343.19Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC2.434e-3343.33Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOYBN2.434e-3344.57Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_NICPL3.179e-3343.13Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_MAIZE3.179e-3342.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_PHYPA4.152e-3342.38Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC4.152e-3341.90Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP7.082e-3341.90Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_PETSP7.082e-3341.90Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_APIGR1.208e-3240.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659723 ID=EY659723; Name=EY659723; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCTAACACAATTACGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGA
CGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCA
TGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGT
GCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCT
TGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTG
TTTTTGCTGTCATTGCTGAGATTGTTCTTGTANGTGGTGCTGAATATTAT
AGAATCACCAACGGTTTGGATTTTGGAGACAAGCTTCACCCAGGTGGTCC
ATTTGACCCACTGGGATTAGCAAANGGATCCTGACAATTTGCATTGCTAA
AGTNGAAGGAGATCAGAATGGGAGACTTGCCATGGTTCGCATGCCTGGGT
TCTTTCTCCAGGCTATGTCACAGTGAAGGTCAGGTGAGAACTTGCTAACA
TCTCAGTGATCCTTTTGCAACAACTGCTTAACGGATCTCCGGAACTAAAA
AAGCTCCACCTG
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