EY659706

Overview
NameEY659706
Unique NameEY659706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659706_ssr21 microsatellite EY659706_ssr21:21..50. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659706_ssr55 microsatellite EY659706_ssr55:55..75. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659706_ssr117 microsatellite EY659706_ssr117:117..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1830 contig Csv1_Contig1830:43..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659706 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 2 
Query:  272 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 634
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226
[Close]
BLAST of EY659706 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2 
Query:  254 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 640
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182
The following BLAST results are available for this feature:
BLAST of EY659706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
Y1765_ARATH5.491e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH5.491e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659706 ID=EY659706; Name=EY659706; organism=Citrus sinensis; type=EST; length=879bp
CTTTGACAAACACAAACCCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CCATGGCGGCGGCGGCGGCGGCGGCAGCGCAGTGGTTGAGTGTGTGTATA
ACGTTCAGCGTAAGCCTAATAATAATAATAATAGGGAGCAGCAGCTTGGT
GGCGGTGGTGAGTGGAAACTCGGAGGGGGACGCGCTGTACGCGCTCAGGA
GAAGCCTATCAGATCCCGATAACGTGCTTCAGAGCTGGGATCCAACTCTC
GTCAATCCCTGCACTTGGTTTCACATAACCTGTAATCAGGACAACCGCGT
TACCCGACTGGATTTGGGTAATTCAAATCTATCCGGCCGTCTCGTCCCTG
AACTGGGCAAGCTCGAGCATTTGCAATACCTGGAACTTTACAAAAACAAC
ATCCAAGGAACTATCCCTGTCGAGCTCGGTAACTTGAAGAGCCTCATCAG
CTTGGACTTGTATAATAACAACATCTCGGGGAAAATCCCTCCTTCCTTGG
CTAAATTGAAATCTCTTGTTTTTTTGCGGCTTAACGATAATCGGCTAACT
GGACAAATTCCCAGGGAACTTGTTGGAATTTCAAGTCTCAAAGTTGTGGA
TGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACAAGCGGACCATTTG
AACACATCCCACTCAACAACTTTGAGAATAACCCTCGATTAGAAGGTCCA
GAGTTGCTGGGACTTGCAAGTTATGACACAAACTGCTCATAAACGATTGA
TTGTTGCTTCAAGCTCTACTCNAGGTTCGAATAGATGTGTCCGCGAAGAT
TGAAAGCGTCTTTACCTAAAAGCATAGTGTTATTGGTGAATGAAGCATCA
TATATGTAAATTGTATATACTGCTTAATG
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