EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.544e-60
Identity = 112/237 (47.26%), Postives = 161/237 (67.93%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            RPK+IV+GASAY R+ D+++IR++C++  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  165 RPKMIVSGASAYPRIIDFQKIREICDEIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.903e-59
Identity = 115/229 (50.22%), Postives = 155/229 (67.69%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+ G SAY+R+ D++R+R + +   A +L DMAH++GLVAAGV PSP + ADV TTTTHK+LRGPRG +I  R               + E+K+N  VFPG QGGP  H I G AVA K+A  PE+KAYQ+QV++N    AQ L+E GY++VSGGT+NHL L++L +K + G   +  L   HI  NKNTVP D  S  V  G+R+GTPA+T+RGF EE+  ++A
Sbjct:  167 QPKMIIGGFSAYSRVVDWQRLRDIADSVGAYLLVDMAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRGGLILARANA------------EVEKKLNSLVFPGTQGGPLMHAIAGKAVAFKEALEPEFKAYQQQVVANARAMAQGLIERGYKVVSGGTDNHLFLIDLVDKGLTGKAADAALGKAHITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGFKEEECRELA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.486e-59
Identity = 113/237 (47.68%), Postives = 160/237 (67.51%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAYAR+ D+ + R++ ++  A+++ DMAHI+GLVAAGV PSP  Y+D VTTTTHK+LRGPRG +I  ++               Y + +N+ +FPG+QGGP  H I   AV  K+A  P +K Y E V+ NC + A+ L+  G+++VSGGT+NH+ LV+L NK I G   E +L++V I  NKNTVP +  S  V  GIR+GT A+T+RGFV++D A++A     A++
Sbjct:  165 KPKLIVAGASAYARILDFPKFREIADEVGALLMVDMAHIAGLVAAGVHPSPVPYSDFVTTTTHKTLRGPRGGLILCKE--------------KYAQILNKNIFPGIQGGPLEHIIAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAIE 387          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_RALPJ (Serine hydroxymethyltransferase OS=Ralstonia pickettii (strain 12J) GN=glyA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.233e-59
Identity = 115/230 (50.00%), Postives = 154/230 (66.96%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 692
            +PKLI+AGASA+A   D+ERI K+     A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K+I G   EKVL   HI  NKN +P D     V  G+R+G+PA+T+RGF E +  KVA+
Sbjct:  167 KPKLIIAGASAFALRIDFERIGKIAKSIGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEQVVKNAAAMAETLMARGLRIVSGRTESHVMLVDLRAKKITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGFKEAEAVKVAH 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.611e-58
Identity = 110/236 (46.61%), Postives = 162/236 (68.64%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            +PK+IVAGASAY R+ D+   R++ ++  A ++ DMAHI+GLVAAG+ P+P  YAD VTTTTHK+LRGPRG ++  ++              +Y+++I++A+FPGLQGGP  H I   AV+ ++A + E+K YQ+QV+ N S  A  L  +GY+LV+GG++NHL+LV+L+ K + G + E+VL+ VHI  NKN VP D     V  G+R+GTPA+T+RGF E++  +VA   D  +
Sbjct:  163 KPKMIVAGASAYPRIIDFATFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGVVLCKE--------------EYKKEIDKAMFPGLQGGPLMHVIASKAVSFQEALSSEFKNYQKQVIKNASVLADELNNLGYDLVAGGSDNHLMLVDLQKKGVTGKKAERVLDDVHITVNKNAVPNDPEGPFVTSGLRLGTPAVTTRGFAEDEIKEVAQLLDKVI 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.749e-58
Identity = 115/237 (48.52%), Postives = 159/237 (67.09%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +P++IVAGASAY R  D+ +I+++  +  A ++ DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG +I  +   +            Y  KIN+AVFPG+QGGP  H I   AVA K+A  P +K YQ +++SN    A  LLE G+ELVSGGT+NHL+LV+L++K+I G   +++ +AV +  NKN VP D     +  GIR+GTPA+TSRG  E+D  ++A   D A++
Sbjct:  166 KPRMIVAGASAYPRAIDFYKIKEIAAEVGAYLMVDMAHIAGLVAAGLHMSPVPYADVVTTTTHKTLRGPRGGLILCKDAER------------YGTKINRAVFPGVQGGPLMHVIAAKAVAFKEAMEPGFKEYQRKIVSNARALADALLERGFELVSGGTDNHLILVDLRSKKITGREAQELFDAVGVTVNKNAVPFDPQPPNIASGIRIGTPAVTSRGLNEDDMVQIAEIMDYAIE 390          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.749e-58
Identity = 116/229 (50.66%), Postives = 154/229 (67.25%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAGASAYAR  D+++I ++  +  A    DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG MI  ++              +Y + I++A+FPG QGGP  H I   A A  +A  PE+KAYQ+Q+++N    A+ LLE G+ LVSGGT+NHL+LV+L+   I G + E +L+ VHI  NKN +P D     V  GIR+GTPA+T+RGF E+D  KVA
Sbjct:  165 KPKMIVAGASAYARAIDFKKIGEIAKEIDAYFFVDMAHIAGLVAAGLHQSPVPYADVVTTTTHKTLRGPRGGMILCKE--------------EYAQLIDKAIFPGSQGGPLMHVIAAKAAAFGEALKPEFKAYQQQIINNAQALAKGLLERGFNLVSGGTDNHLILVDLRGTGITGKQAETLLDEVHITCNKNAIPFDPEKPFVTSGIRLGTPAVTTRGFKEKDMDKVA 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.590e-58
Identity = 115/229 (50.22%), Postives = 154/229 (67.25%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK++VAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+E GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  166 KPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGADE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIERGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ALKOO (Serine hydroxymethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=glyA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.590e-58
Identity = 116/250 (46.40%), Postives = 163/250 (65.20%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTK 752
            +PKLIVAGASA+ R  D+++ R++ ++  A ++ DMAHI+GLVAAG+  +P +YAD VTTTTHK+LRGPRG  I  ++               Y + I++A+FPGLQGGP  H I   AV+ K+A +PE+KAYQEQV+ N +K  + L   G+ LVSGGT+NHL+L++L+NK I G   EK+L+ V +  NKNT+P D  S  V  GIR+GTPA+T+RG  E+D   +A      +    +I   +S  K
Sbjct:  165 KPKLIVAGASAFPRKIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHENPCDYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKMIDKAIFPGLQGGPLMHVIAAKAVSFKEALSPEFKAYQEQVIKNAAKLGEELKSRGFNLVSGGTDNHLLLLDLRNKNITGKDAEKLLDEVGVTVNKNTIPYDPESPFVTSGIRIGTPAVTTRGMKEDDMVTIAEIIGTIIDHPERIDEVSSMVK 400          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_METTP (Serine hydroxymethyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.688e-58
Identity = 113/229 (49.34%), Postives = 159/229 (69.43%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            RP++IV GASAY R+ D++ +R++ ++  A+++AD+AHI+GLVAAGV PSP  YAD+VTTTTHK+LRGPRG +I  R+              +  + I++AVFPG+QGGP  HTI   AVA K+A TPE++ YQEQ++ N +  A  L+E G++LVSGGT+NHL+LV L  + I G   ++ LE+  IA NKN +P D  +  V  GIR+GTPA+TSRG  E +  ++A
Sbjct:  163 RPQMIVCGASAYPRIIDFKAMREIADEVGALLMADIAHIAGLVAAGVHPSPIPYADIVTTTTHKTLRGPRGGVIMCRE--------------ELAQAIDRAVFPGIQGGPMMHTIAAKAVAFKEAMTPEFRRYQEQIVRNAAALADRLIENGFDLVSGGTDNHLMLVKLLKEGITGKEADETLESAGIALNKNMIPFDPRTPFVTSGIRIGTPAVTSRGMKENEMREIA 377          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOB18.544e-6047.26Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_ALHEH1.903e-5950.22Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_CLOB82.486e-5947.68Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_RALPJ7.233e-5950.00Serine hydroxymethyltransferase OS=Ralstonia picke... [more]
GLYA_NATTJ1.611e-5846.61Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA_PELTS2.749e-5848.52Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_DESRM2.749e-5850.66Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_STRMK3.590e-5850.22Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_ALKOO3.590e-5846.40Serine hydroxymethyltransferase OS=Alkaliphilus or... [more]
GLYA_METTP4.688e-5849.34Serine hydroxymethyltransferase OS=Methanosaeta th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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