EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 102/237 (43.04%), Postives = 153/237 (64.56%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            +PKLIVAGASAY R  D+++ R++ ++  A ++ DMAHI+GLVAAG+  +P  YA  VTTTTHK+LRGPRG MI   +   E          ++ +K+++++FPG+QGGP  H I   AVA  +A + E+K Y +Q+++N  +  + L   G ++VSGGT+NHL+L++L++ ++ G   EK L+AV I  NKN +P D     V  GIR+GT A+TSRGF E +  ++       +K
Sbjct:  163 QPKLIVAGASAYPREIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYAHFVTTTTHKTLRGPRGGMILCNEETAE----------EFGKKLDKSIFPGIQGGPLMHVIAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELIALTLK 389          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ALCBS (Serine hydroxymethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=glyA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 104/229 (45.41%), Postives = 146/229 (63.76%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+IVAG SAY+++ D++R R + ++  AI+L DMAH++GLVAAGV PSP   AD+ TTTTHK+L GPRG +I        + K  +E+    ++KIN AVFPG QGGP  H I   A+  K+A   ++K YQ+QV+ N    A   +E G+++VS GTENHL L++L  + I G   +  L   +I  NKN VP D  S  V  G+R+G+P++T RGF E D   +A
Sbjct:  167 KPKMIVAGFSAYSQIVDWQRFRDIADEVGAILLVDMAHVAGLVAAGVYPSPVGIADITTTTTHKTLGGPRGGLI--------MGKASEEI----QKKINSAVFPGGQGGPLEHVIAAKAICFKEAMQDDFKGYQQQVVKNAQAMAGVFIERGFDVVSNGTENHLFLLSLIKQDITGKDADAALGRANITVNKNAVPNDPRSPFVTSGLRIGSPSITRRGFDEADAKALA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_VIBCH (Serine hydroxymethyltransferase 2 OS=Vibrio cholerae GN=glyA2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 107/225 (47.56%), Postives = 144/225 (64.00%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDF 677
            +PK+I+AG SA  R  D+ + R + ++  A+++ DMAHI+GLVA G  PSP  +A VVTTTTHK+LRGPRG MI      +EI+K           KIN AVFPGLQGGP  H I   AVA  +A  PE++ Y + V+ N    A+ L   G ++V+GGT+ HL+LV+L+ K + G++VE+ LE   I  NKN +P D    M+  GIR+GTPA TSRGF  E+F
Sbjct:  181 KPKMIIAGGSAIPRTIDFAQFRSIVDEVGALLMVDMAHIAGLVATGAHPSPLPHAHVVTTTTHKTLRGPRGGMILTNS--EEIHK-----------KINSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFRTYIDSVIDNAKVLAEVLQTRGCDIVTGGTDTHLMLVDLRPKGLKGNQVEQALERAGITCNKNGIPFDEEKPMITSGIRLGTPAGTSRGFGREEF 392          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA1_RHOPA (Serine hydroxymethyltransferase 1 OS=Rhodopseudomonas palustris GN=glyA1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.237e-50
Identity = 111/257 (43.19%), Postives = 151/257 (58.75%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLKNSWPQ 773
            +PKLI+AG SAY R +D++R R++ +   A  + DMAH +GLVA GV  SP  +A V TTTTHKSLRGPRG +I                     +K N A+FPGLQGGP  H I   AVA K+A  P++K Y + V+ N    A+TL   G++LVSGGT+NHL+LV+L+ K + G+  EK L    I  NKN +P D     V  G+R+GTPA T+RGF   +F +V +   A V  A+   S+ +   ++ S  Q
Sbjct:  177 KPKLIIAGGSAYPRAWDFKRFREIADSVGAYFMVDMAHFAGLVAGGVHASPVPHAHVTTTTTHKSLRGPRGGLILTNDEA-------------LAKKFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYTKNVVENAKALAETLRSAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGHLI-AEVLNAIAQSSDGAAPLVEASVKQ 419          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STRA5 (Serine hydroxymethyltransferase OS=Streptococcus agalactiae serotype V GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 109/239 (45.61%), Postives = 148/239 (61.92%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE-MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            T+PKLIVAGASAY+R+ D+E+ R++ +   A ++ DMAHI+GLVA+G  PSP  YA V TTTTHK+LRGPRG +I                     +KIN AVFPGLQGGP  H I   AVALK+A  P +K Y E ++ N    A+   E   + L+S GT+NHL LV++     +G + + VLE V+I  NKN++P + +S     GIR+GTPA+TSRG   E+  ++A     A+K
Sbjct:  166 TQPKLIVAGASAYSRIIDFEKFRQIADAVDAYLMVDMAHIAGLVASGHHPSPIPYAHVTTTTTHKTLRGPRGGLILTNDEA-------------IAKKINSAVFPGLQGGPLEHVIAAKAVALKEALDPSFKIYGEDIIKNAQAMAKVFKEDDDFHLISDGTDNHLFLVDVTKVIENGKKAQNVLEEVNITLNKNSIPFERLSPFKTSGIRIGTPAITSRGMGVEESRRIAELMIKALK 391          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STRA3 (Serine hydroxymethyltransferase OS=Streptococcus agalactiae serotype III GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 109/239 (45.61%), Postives = 148/239 (61.92%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE-MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            T+PKLIVAGASAY+R+ D+E+ R++ +   A ++ DMAHI+GLVA+G  PSP  YA V TTTTHK+LRGPRG +I                     +KIN AVFPGLQGGP  H I   AVALK+A  P +K Y E ++ N    A+   E   + L+S GT+NHL LV++     +G + + VLE V+I  NKN++P + +S     GIR+GTPA+TSRG   E+  ++A     A+K
Sbjct:  166 TQPKLIVAGASAYSRIIDFEKFRQIADAVDAYLMVDMAHIAGLVASGHHPSPIPYAHVTTTTTHKTLRGPRGGLILTNDEA-------------IAKKINSAVFPGLQGGPLEHVIAAKAVALKEALDPSFKIYGEDIIKNAQAMAKVFKEDDDFHLISDGTDNHLFLVDVTKVIENGKKAQNVLEEVNITLNKNSIPFERLSPFKTSGIRIGTPAITSRGMGVEESRRIAELMIKALK 391          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STRA1 (Serine hydroxymethyltransferase OS=Streptococcus agalactiae serotype Ia GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 109/239 (45.61%), Postives = 148/239 (61.92%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLE-MGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 713
            T+PKLIVAGASAY+R+ D+E+ R++ +   A ++ DMAHI+GLVA+G  PSP  YA V TTTTHK+LRGPRG +I                     +KIN AVFPGLQGGP  H I   AVALK+A  P +K Y E ++ N    A+   E   + L+S GT+NHL LV++     +G + + VLE V+I  NKN++P + +S     GIR+GTPA+TSRG   E+  ++A     A+K
Sbjct:  166 TQPKLIVAGASAYSRIIDFEKFRQIADAVDAYLMVDMAHIAGLVASGHHPSPIPYAHVTTTTTHKTLRGPRGGLILTNDEA-------------IAKKINSAVFPGLQGGPLEHVIAAKAVALKEALDPSFKIYGEDIIKNAQAMAKVFKEDDDFHLISDGTDNHLFLVDVTKVIENGKKAQNVLEEVNITLNKNSIPFERLSPFKTSGIRIGTPAITSRGMGVEESRRIAELMIKALK 391          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 108/230 (46.96%), Postives = 142/230 (61.74%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 692
            +PKL++AG SAY R  D+ R R++ +K  A  +AD+AHI+GLVA G   SP  Y   VT+TTHK+LRGPRG +I      +EI K           KIN A+FPGLQGGP  H I   AVA  +   PEYK+Y +QV+SN    A +L E GY++++GGT+NH+VLV+L    I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  167 KPKLLIAGFSAYPRNIDFARFREIADKVGAYFMADIAHIAGLVATGEHQSPIPYTHAVTSTTHKTLRGPRGGLILSND--EEIGK-----------KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIKQVISNAKALASSLQERGYDILTGGTDNHIVLVDLCKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_METEP (Serine hydroxymethyltransferase OS=Methylobacterium extorquens (strain PA1) GN=glyA PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 111/257 (43.19%), Postives = 145/257 (56.42%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------------DAAVKLAVKIK 731
            +PK+I+AG S Y R +D+ + R++ +   A    DMAH +GLVAAG+ PSPF +A V TTTTHK+LRGPRG MI                     +K N A+FPGLQGGP  H I   AVA  +A  PE+K Y +QV+ N    A T++  GY++ SGGT+NHL+LV+L+ K + G   E  L    I  NKN VP D     +  GIR+GTPA T+RGF   +F +V                  DAAV+ AVK K
Sbjct:  179 KPKVIIAGGSGYPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMILTNDEA-------------LAKKFNSAIFPGLQGGPLMHVIAAKAVAFGEALKPEFKIYAKQVIDNARALADTIISGGYDITSGGTDNHLMLVDLQKKGLTGKAAEAALSRADITCNKNGVPFDPQKPTITSGIRLGTPASTTRGFGVAEFKQVGSLIVQVLDGIAEKGDGGDAAVEAAVKEK 422          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_METEA (Serine hydroxymethyltransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=glyA PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.615e-50
Identity = 111/257 (43.19%), Postives = 145/257 (56.42%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------------DAAVKLAVKIK 731
            +PK+I+AG S Y R +D+ + R++ +   A    DMAH +GLVAAG+ PSPF +A V TTTTHK+LRGPRG MI                     +K N A+FPGLQGGP  H I   AVA  +A  PE+K Y +QV+ N    A T++  GY++ SGGT+NHL+LV+L+ K + G   E  L    I  NKN VP D     +  GIR+GTPA T+RGF   +F +V                  DAAV+ AVK K
Sbjct:  179 KPKVIIAGGSGYPRHWDFAKFREIADSVGAYFFVDMAHFAGLVAAGLHPSPFPHAHVATTTTHKTLRGPRGGMILTNDEA-------------LAKKFNSAIFPGLQGGPLMHVIAAKAVAFGEALKPEFKIYAKQVIDNARALADTIISGGYDITSGGTDNHLMLVDLQKKGLTGKAAEAALSRADITCNKNGVPFDPQKPTITSGIRLGTPASTTRGFGVAEFKQVGSLIVQVLDGIAEKGDGGDAAVEAAVKEK 422          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BACSK1.237e-5043.04Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_ALCBS1.237e-5045.41Serine hydroxymethyltransferase OS=Alcanivorax bor... [more]
GLYA2_VIBCH1.237e-5047.56Serine hydroxymethyltransferase 2 OS=Vibrio choler... [more]
GLYA1_RHOPA1.237e-5043.19Serine hydroxymethyltransferase 1 OS=Rhodopseudomo... [more]
GLYA_STRA51.615e-5045.61Serine hydroxymethyltransferase OS=Streptococcus a... [more]
GLYA_STRA31.615e-5045.61Serine hydroxymethyltransferase OS=Streptococcus a... [more]
GLYA_STRA11.615e-5045.61Serine hydroxymethyltransferase OS=Streptococcus a... [more]
GLYA_RICFE1.615e-5046.96Serine hydroxymethyltransferase OS=Rickettsia feli... [more]
GLYA_METEP1.615e-5043.19Serine hydroxymethyltransferase OS=Methylobacteriu... [more]
GLYA_METEA1.615e-5043.19Serine hydroxymethyltransferase OS=Methylobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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