EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.123e-58
Identity = 113/229 (49.34%), Postives = 153/229 (66.81%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK+I+AGASAYAR  D++R R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA V TTTTHK+LRGPRG MI   + +++            +   N+A+FPG+QGGP  H I   AV  K+A  PE+K YQ+Q++ N     + L   G ++VS GT+NHL+LV+L    + G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF KVA
Sbjct:  165 KPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAHIAGLVAAGLHPSPIPYAHVTTTTTHKTLRGPRGGMILCSQEMQD------------KYNFNKAIFPGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.997e-58
Identity = 113/236 (47.88%), Postives = 155/236 (65.68%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            +PK+++AG SAY R+ D+ + R++ ++  A+++ DMAH +GLVA GV PSPF YADVVTTTTHKSLRGPRGAMI  +               +Y + I++AVFPG+QGGPH+ T   +AVALK+A+T  +K Y  QV+ N +  A  L+E G+ LV+GGTENHL+L++L NK I G +  K L+A  I  N N+VP D      P GIR+GT A+TSRGF + +   +    D  V
Sbjct:  171 KPKILIAGHSAYPRILDFAKFREIADEVGALLMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKA--------------EYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEASTDSFKKYTAQVVENAASLADVLIEKGFNLVTGGTENHLMLIDLSNKNITGKQAAKALDAAGIVLNCNSVPFDKRKPFDPSGIRLGTCAITSRGFAKAEMVILGNMMDRVV 392          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.997e-58
Identity = 116/230 (50.43%), Postives = 151/230 (65.65%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 692
            +PKLI+AGASA+A   D+ERI KV     A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +P +KAYQEQV+ N    A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA+
Sbjct:  167 KPKLIIAGASAFALRIDFERIAKVAKAVGAYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAH 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.364e-57
Identity = 114/228 (50.00%), Postives = 152/228 (66.67%), Query Frame = 3
Query:    9 PKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            PK+IVAGASAY R+ D++  R++ ++  AI++ DMAHI+GLVAAGV PSP  YADVVTTTTHK+LRGPRG MI  ++              +Y +KI+ AVFPG QGGP  H I   AV+ K+A T ++K YQ+ ++ N    A  L+E G++LVS GT+NHL+L+NL N  I G   +  L+ V I  NKN +P D  S  +  GIR+GTPA+TSRG  EED  ++A
Sbjct:  167 PKIIVAGASAYPRILDFKAFREIADEVGAILMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTLRGPRGGMILCKQ--------------EYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEALTDDFKIYQQNIVKNAKALASALMEKGFKLVSDGTDNHLMLINLTNMNITGKEAQHKLDEVCITCNKNGIPFDTQSPFITSGIRLGTPAVTSRGMNEEDMKEIA 380          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 115/225 (51.11%), Postives = 151/225 (67.11%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            TRPKLI+AGASAY+   D+ER  KV     AI + D+AH +GLVAAGV P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QVL+N    A+TL + G  +VSG TE+HL+LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  165 TRPKLIIAGASAYSLRIDFERFAKVAKAVGAIFMVDIAHYAGLVAAGVYPNPVPHADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALSPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRTESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 114/229 (49.78%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PKLIVAGASAY R+ D+  + K+  +  A ++ DMAHI+GLVAAG  PSP  YADVVTTTTHK+LRGPRG MI   KG              + +K++  +FPG+QGGP  H I   AVA K+A TPE+KAYQ+QV+ N +  A+ L++ G +LVSGGT+NH++L+NL N  I G   E ++E   I  NKNT+P D +   V  GIR+GTP +TSRG  E +   +A
Sbjct:  165 KPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRGPRGGMILSNKG--------------FGKKLSSQIFPGIQGGPLMHVIAAKAVAFKEALTPEFKAYQQQVVKNAACLAKRLMDNGVDLVSGGTDNHMMLLNLSNLDITGKEAEGLVEQAGITVNKNTIPFDKNGPAVTSGIRVGTPTITSRGMKEPEMELIA 379          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_SYMTH (Serine hydroxymethyltransferase OS=Symbiobacterium thermophilum GN=glyA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 115/236 (48.73%), Postives = 154/236 (65.25%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            RPKLIVAG SAY R+ D++R R++  +  AI++ DMAH +GL A G  P+P E+A VVTTTTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA KQ + P+Y+AY  QV+ N    AQ LLE GY LV+GGT+NHL+LV+L+ K I G   E +L+ V I  NKN +P D    MV  GIR+GTPA+T+RG  E +  ++A   D A+
Sbjct:  163 RPKLIVAGYSAYPRVLDFKRFREIAEEVGAILMVDMAHFAGLAATGYYPNPVEHAHVVTTTTHKTLRGPRGGAILCKK--------------EFAKEIDKAVFPGMQGGPLMHIIAAKAVAFKQLSDPDYRAYCGQVVKNAKALAQALLERGYRLVTGGTDNHLMLVDLRPKGITGRDAEHLLDRVSITVNKNAIPNDPEKPMVTSGIRIGTPAMTTRGMKEAEMVQIADLIDRAI 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 114/229 (49.78%), Postives = 153/229 (66.81%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            +PK++VAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV PSP E+A VVT+TTHK+LRGPRG +I   KG  E          D  +K+   VFPG+QGGP  H I G AVA K+A  P +KAYQ+QV+ N    A TL+  GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  166 KPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIV-AKGAGE----------DLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 113/231 (48.92%), Postives = 154/231 (66.67%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 695
            +PKLI+AGASAY++  D+ERI K+  +  AI + DMAH +GLVAAGV P+P  +AD+VT+TTHKSLRGPRG +I  +               ++E+ IN AVFPGLQGGP  H I G A A K+A  P +K YQ+QV++N    A+TL+  G  +VSGGT++H++LV+L+ K++ G   E VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F
Sbjct:  166 KPKLIIAGASAYSKKIDFERIGKLAKEVGAIFMVDMAHYAGLVAAGVYPNPVPHADIVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAVFPGLQGGPLMHVIAGKAAAFKEAAEPGFKDYQKQVVANAKALAETLIARGLRIVSGGTDSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQVGNF 382          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 121/253 (47.83%), Postives = 160/253 (63.24%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA--------YFFDAAVKLAVKIKSE 737
            +PKLIVAGASAY R+ D+E+  ++     A  + DMAHI+GLVAAG+ PSP  YA  VT+TTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA K+A TPE+K YQ+Q++ N    A+ L+ +GY LVSGGT+NHL+LV+L++K I G   EK LE   I  NKN +P D     V  GIR+GTPALT+RG  E++   VA         F D+ VK  VK + E
Sbjct:  163 KPKLIVAGASAYPRIIDFEKFAQIAEDVGAYFMVDMAHIAGLVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK--------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVE 401          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_EUBR36.123e-5849.34Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_DESPS7.997e-5847.88Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA1_RALSO7.997e-5850.43Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_CLOCE1.364e-5750.00Serine hydroxymethyltransferase OS=Clostridium cel... [more]
GLYA_POLSJ1.782e-5751.11Serine hydroxymethyltransferase OS=Polaromonas sp.... [more]
GLYA_DESAA1.782e-5749.78Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_SYMTH2.327e-5748.73Serine hydroxymethyltransferase OS=Symbiobacterium... [more]
GLYA_STRM52.327e-5749.78Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_POLSQ2.327e-5748.92Serine hydroxymethyltransferase OS=Polynucleobacte... [more]
GLYA_DICT62.327e-5747.83Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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