EY659702

Overview
NameEY659702
Unique NameEY659702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 113/236 (47.88%), Postives = 149/236 (63.14%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 710
            +PK+IV GASAY R+ D+   R + +K  A ++ DMAHI+GLVAAGV P+P  YA+ VTTTTHK+LRGPRG MI  R+              +Y + IN  +FPG+QGGP  H I   AVA K+A  PE+K YQ+Q++ N +K A+ L+  G++L SGGT+NHL+L+N     I G   E+ L+   I  NKNTVP +  S  V  GIR+GTPA TS G  E +  +VA F   AV
Sbjct:  163 KPKMIVVGASAYPRIIDFPAFRAIADKVGAKVMVDMAHIAGLVAAGVHPNPVPYAEFVTTTTHKTLRGPRGGMILCRE--------------EYAKTINSQIFPGIQGGPLMHVIAAKAVAFKEALQPEFKTYQQQIVKNAAKLAECLMAKGFKLTSGGTDNHLMLINFTGTEITGKAAEEALDKAGITVNKNTVPFETRSPFVTSGIRVGTPACTSHGLKETEMEQVAGFIADAV 384          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DIAST (Serine hydroxymethyltransferase OS=Diaphorobacter sp. (strain TPSY) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 112/224 (50.00%), Postives = 146/224 (65.18%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            +PKLI+AGASAYA   D+ER  K+  +  AI   D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  166 KPKLIIAGASAYALRIDFERFAKIAKEVGAIFWVDIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_ACISJ (Serine hydroxymethyltransferase OS=Acidovorax sp. (strain JS42) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 112/224 (50.00%), Postives = 146/224 (65.18%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            +PKLI+AGASAYA   D+ER  K+  +  AI   D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A +PE+K YQ+QV  N   FA+TL++ G  +VSG TE+H++LV+L+ K I G   E  L   HI  NKN +P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  166 KPKLIIAGASAYALRIDFERFAKIAKEVGAIFWVDIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALSPEFKQYQQQVTKNAKVFAETLIQRGLRIVSGRTESHVMLVDLRAKGITGKEAEAALGKAHITINKNAIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 107/236 (45.34%), Postives = 161/236 (68.22%), Query Frame = 3
Query:    9 PKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKL 716
            P +++ G SAY+R  DY+R++ +  +  A + AD++HIS LVA+G++ SPFE+ D+V TTT K LRGPRGA+IF+R+ V    K G+ V  D + +IN AVFP LQGGPHNHTI G+A AL  A TPE+  Y  +V+ N  +    L  +G ++++GGT+NH++LV+L++  +DG+ VE + +A+ I+ N+N + G+ S + P GIR+GT A+T+RGF  E+  +V       VKL
Sbjct:  182 PHILICGYSAYSRDIDYKRLQSIAGRNGAFLFADISHISPLVASGLMNSPFEHCDIVMTTTQKGLRGPRGALIFYRRAV---TKNGETV--DLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKL 412          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 113/223 (50.67%), Postives = 147/223 (65.92%), Query Frame = 3
Query:    9 PKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            PKLI+AGASAY+   D+ER  KV     AI + D+AH +GLVAAGV P+P  +ADVVT+TTHKSLRGPRG +I  +                +E+ IN A+FPGLQGGP  H I   AVA K+A +PE+KAYQ+QV+ N    A TL E G  +VSG TE+H++LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  167 PKLIIAGASAYSLRIDFERFAKVAKDVGAIFMVDIAHYAGLVAAGVYPNPVPHADVVTSTTHKSLRGPRGGIILMKS--------------QHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEAMSPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRTESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_RHOFD (Serine hydroxymethyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 110/225 (48.89%), Postives = 149/225 (66.22%), Query Frame = 3
Query:    3 TRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 674
            ++PKLI+AGASAY+   D+ R  KV     AI + DMAH +GL+AAG+ P+P  +ADVVT+TTHKSLRGPRG +I  +                +E+ IN A+FPGLQGGP  H I   AVA K+A  PE+K YQ+QVL+N    A+TL+  G  +VSG TE+H++LV+L++K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  165 SKPKLIIAGASAYSLRIDFARFAKVAKDVGAIFMVDMAHYAGLIAAGIYPNPVPHADVVTSTTHKSLRGPRGGIILMKA--------------QHEKAINSAIFPGLQGGPLMHVIAAKAVAFKEALQPEFKVYQQQVLTNARVVAETLVSRGLRIVSGRTESHVMLVDLRSKSITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 114/229 (49.78%), Postives = 151/229 (65.94%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA 689
            RPKLIV GASAY R  D+ R+R + +   A+++ DMAHI+GL+AAG+  SP  YADVVTTTTHK+LRGPRG MI   +              +Y   I++AVFPG+QGGP  H I   AVAL +A  PE+K YQEQ++ N    AQ L E G+ELV+GGT+ HL+LV+L+NK + G+  E +L+ V +  NKN VP D     V  GIR+GTPA+T+RG  E+   ++A
Sbjct:  166 RPKLIVGGASAYPRELDFARMRAIADDVGALLMIDMAHIAGLIAAGLHMSPVPYADVVTTTTHKTLRGPRGGMILCPE--------------EYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRPEFKTYQEQIVKNARALAQALQERGFELVAGGTDTHLILVDLRNKGLTGAVAEDLLDRVDVTVNKNMVPFDPQPPRVTSGIRIGTPAVTTRGMKEDSMVQIA 380          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA3_BURS3 (Serine hydroxymethyltransferase 3 OS=Burkholderia sp. (strain 383) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 109/220 (49.55%), Postives = 147/220 (66.82%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGF 662
            +PKLIVAGASA++   D+ER+ K+     A ++ DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               +YE+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQE+V+ N    A+TL++ G  +VSG TE+H++LV+L+ K I G   E  L A HI  NKN +P D     V  G+R+G+PA+T+RGF
Sbjct:  167 KPKLIVAGASAFSLKIDFERLAKIAKSVGAYLMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EYEKPINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEKVVENARVLAETLVKRGLRIVSGRTESHVMLVDLRAKHITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGF 372          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA2_BURS3 (Serine hydroxymethyltransferase 2 OS=Burkholderia sp. (strain 383) GN=glyA2 PE=3 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 109/220 (49.55%), Postives = 147/220 (66.82%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGF 662
            +PKLIVAGASA++   D+ER+ K+     A ++ DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               +YE+ IN A+FPG+QGGP  H I G AVA K+A +PE+KAYQE+V+ N    A+TL++ G  +VSG TE+H++LV+L+ K I G   E  L A HI  NKN +P D     V  G+R+G+PA+T+RGF
Sbjct:  167 KPKLIVAGASAFSLKIDFERLAKIAKSVGAYLMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EYEKPINSAIFPGIQGGPLMHVIAGKAVAFKEALSPEFKAYQEKVVENARVLAETLVKRGLRIVSGRTESHVMLVDLRAKNITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGF 372          
BLAST of EY659702 vs. ExPASy Swiss-Prot
Match: GLYA_STACT (Serine hydroxymethyltransferase OS=Staphylococcus carnosus (strain TM300) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 117/264 (44.32%), Postives = 168/264 (63.64%), Query Frame = 3
Query:    6 RPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSENSGTKLKNSWPQHSPLTS 791
            +PKLIVAGASAY R  D+++ +++ ++  A ++ DMAHI+GLVAAG+  +P +YAD VTTTTHK+LRGPRG MI  ++              +Y ++I++ +FPG+QGGP  H I   AVA  +A  P++K YQEQV+ N    A TL+E G+ +VSGGT+NHLV V++K    I G   E+ L+ V I  NKNT+P D     V  G+R+GTPA T+RGF E DF +VA        +++ +++     KLK +  + + LTS
Sbjct:  163 KPKLIVAGASAYPREIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHQNPVDYADFVTTTTHKTLRGPRGGMILTKE--------------EYAKQIDKTIFPGIQGGPLEHVIAAKAVAFGEALNPDFKDYQEQVVKNAKALADTLIEEGFRVVSGGTDNHLVAVDVKGSFGITGKEAEEALDEVGITCNKNTIPFDQEKPFVTSGLRLGTPAATTRGFEEADFEEVAKI------ISLVVQNPKDEAKLKEASDRVAALTS 406          
The following BLAST results are available for this feature:
BLAST of EY659702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOLS4.388e-5647.88Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_DIAST4.388e-5650.00Serine hydroxymethyltransferase OS=Diaphorobacter ... [more]
GLYA_ACISJ4.388e-5650.00Serine hydroxymethyltransferase OS=Acidovorax sp. ... [more]
GLYC_ENCCU5.731e-5645.34Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_VARPS5.731e-5650.67Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_RHOFD5.731e-5648.89Serine hydroxymethyltransferase OS=Rhodoferax ferr... [more]
GLYA_DESAP5.731e-5649.78Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA3_BURS35.731e-5649.55Serine hydroxymethyltransferase 3 OS=Burkholderia ... [more]
GLYA2_BURS35.731e-5649.55Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA_STACT7.485e-5644.32Serine hydroxymethyltransferase OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659702 ID=EY659702; Name=EY659702; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAATTGATTGTTGCTGGTGCTAGTGCTTATGCACGATTG
TACGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGCTATAAT
GTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTGTCATCC
CTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCACAAATCA
CTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGTGAAAGA
GATTAACAAACAAGGGAAGGAGGTGTTTTATGATTATGAAGAAAAAATAA
ATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCACACAACCACACAATT
ACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTATAAAGC
CTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGACTCTGC
TCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCATCTAGTG
TTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGAAAAAGT
GTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTGGGGATG
TGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACT
TCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGA
TGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAAACTCAGGAACAA
AGTTGAAGAATTCGTGGCCACAACACAGTCCGCTTACTTCAATCCGAGAT
TGCGAACTTCGCCATGATGTGANGAGTATGCAAACAGTCCCCACATTGGG
TTTGAAAAGAAACCATGAGTACAGACTGAGAGAAAACGCACT
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