EY659687

Overview
NameEY659687
Unique NameEY659687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659687_ssr530 microsatellite EY659687_ssr530:530..547. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2046 contig Csv1_Contig2046:26..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  109 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            + SN +V+FSK+YC YC R K +  QL     VVELD   DG +IQ  L E+ G+RTVP VF+ GKHIGG D +    + G+L
Sbjct:   41 ILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQL 123          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  109 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            + SN + +FSKTYC Y  R K + + L  +  +VELD+  DG +IQ+ L +  G+ TVP VF+ G+H+GG D     H  G+L
Sbjct:   38 IYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQL 120          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.708e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   88 LNKAKEIVSSNPVVVFSKTYCGYC----TRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            +   K++++ N + V SKTYC YC      + E LK   +   V++L+   +G+ IQAAL E  GQRTVPN++I GKHIGG D + E  + G+L
Sbjct:    7 IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGEL 100          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  100 KEIVSSNPVVVFSKTYCGYC-TRVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 357
            K+++    V V +KTYC YC   +  L ++L    +   V+ELD  S+GS+IQ AL E +GQ+TVPNV+I GKHIGG   +    + GKL
Sbjct:   45 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 134          
BLAST of EY659687 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  109 VSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 318
            V+ N VVVF+K+YC YC   ++++       +V ++D+ ++G +IQ+ L + TGQRTVPN+FI  KH+GG
Sbjct:   12 VADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGG 81          
The following BLAST results are available for this feature:
BLAST of EY659687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GRXC3_ARATH7.614e-1649.40Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ4.935e-1542.17Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX1_YEAST2.708e-1342.55Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX2_YEAST6.670e-1244.44Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX1_SCHPO1.486e-1144.29Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-014-A04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659687 ID=EY659687; Name=EY659687; organism=Citrus sinensis; type=EST; length=891bp
TGCGTAGACCCACGCGTCCGAAAACTAAAATCACGTCAAATGGGTTTATT
TCAAAGCAAAATAAGCAAAGAAGAGCTTGAAATCGCGCTTAACAAGGCCA
AGGAAATCGTCTCCTCCAATCCCGTCGTCGTCTTCAGCAAAACCTACTGT
GGTTATTGTACAAGGGTGAAGGAGTTGCTTAAACAGCTTGGAACGAGTTT
CAAAGTCGTAGAATTGGATATTGAAAGTGATGGAAGTAAAATTCAAGCAG
CTCTGGCAGAGTGGACTGGGCAGAGAACCGTACCCAATGTGTTCATTGGG
GGAAAACACATCGGTGGCTGCGACACTGTAGTAGAGAAGCACCAAGGAGG
AAAGCTGGTCCCCCTTCTTCGTGATGCCGGTGCCCTCGCCCTTGCTGACA
AATGATAATTTTGCTCCGTTAAGATCAGAACCACAAGTTCGTGTACATGG
GCTGAAGTGAAGAAATGCAACAATATTAAAGTGACCAATTATATGGTGTG
TAAAAGTAACAATCGATGTCCACTTTATTTGTGTGTGTGTGTGTGTGTTT
TATAGACATTTCTCTGCTTGATTGTAAAGTAAAATGAGAGATATGCATGC
GTTGCTGCTCTCTGTATAAGGAGGGAAGCATTCGACCGGGAAGCGGCTTC
AGAGGTTTGTATTGNTGGTGAGACACCAACTAGCGCCTCTGGTTCATTCA
CATTTTATCGCAACCGGCAACGCTGGCTTTCAAGTCAACTAGCATGCGGT
AGAAAAAGTAAAGTGCATATTTATATATCAGGAAAAGAAAGAGCATGATC
AAATTCTTCTCTGNAGTTNACTTTCTATAACTTTGGAATACATCTCCTTT
CATTGNTTAAAAAAAAAAAAAAAAAAAAGGGCGNCGCTCTA
back to top