EY659680

Overview
NameEY659680
Unique NameEY659680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659680_ssr724 microsatellite EY659680_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:113..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_ROSS1 (60 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 102/201 (50.75%), Postives = 137/201 (68.16%), Query Frame = 1
Query:  202 KDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            K + F++ +R A++ G+D V+DAV  TLGPRGRNV +D+ FG+P V +DGVT+A+ IEL DP EN GA L+ EVA+KTND  GDGTTTA+VLA+ I+  GL  V +GANP+ +KRG+DK V  +V EL+  A P+  R DI  VA ISA  D  IG +IA+ ++KVG DGV+++              GM+  +GYISP F
Sbjct:    3 KQLYFNEDARRALKRGVDIVADAVKTTLGPRGRNVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSVAIPVRDRADIAHVAAISAA-DSEIGDLIAEVMEKVGKDGVITVEESKGIAFEKEYTEGMQIDRGYISPYF 202          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_MYCLE (60 kDa chaperonin 2 OS=Mycobacterium leprae GN=groL2 PE=3 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 100/202 (49.50%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            AK IA+D+ +R  ++ G++ ++DAV +TLGP+GRNVVL++ +G+P + NDGV+IA+ IEL DP E  GA L++EVA KT+D AGDGTTTA+VLA+ ++K GL +V +GANP+ LKRGI+K V  + E L K A+ +E ++ I A A ISAG D  IG +IA+A+DKVG +GV+++              GM   +GYIS  F
Sbjct:    2 AKTIAYDEEARRGLERGLNSLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVKEGLRNVAAGANPLGLKRGIEKAVDKVTETLLKDAKEVETKEQIAATAAISAG-DQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYF 202          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SYNS3 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9311) GN=groL1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 101/221 (45.70%), Postives = 153/221 (69.23%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVT 855
            AK ++F   SR +++ G++ ++DAV +T+GPRGRNVVL++ +GSP +VNDG TIA+ IELADP EN GA LI++VASKT D AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V  L ++++ + G D I+ VAT+S+G D+ +G M+A+A+D+V  DGV+++              GM   +GY SP F +   R  C   NA +L+T
Sbjct:    2 AKLLSFSNESRESLERGMNALADAVRVTIGPRGRNVVLEKSYGSPDIVNDGDTIAKEIELADPFENIGAKLIQQVASKTKDKAGDGTTTATVLAQAMVEEGLRNTAAGASPIELRRGMEKAVAAVVASLNQRSQSVSG-DAIRQVATVSSGGDEEVGRMVAEAMDRVSFDGVITVEESKSLATELEVTEGMAFDRGYSSPYFVTDGDRQICEFENALLLLT 221          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SYNFM (60 kDa chaperonin 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 97/202 (48.02%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            AK + +D ++R A+ +G++ ++DAV +TLGP+GRNVV+++ FG P V  DGVT+A+ IEL D  EN GA +++EVASKT+D AGDGTTTA++LA+ I   G   V +GANP++LKRGI+K V  +V+EL+K ++P + + +I  V TISA ND  IG +IA+A++KVG +GV+++              GM+  +GYISP F
Sbjct:    2 AKQLIYDVKAREALLSGVNILADAVKVTLGPKGRNVVIEKAFGGPTVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDVAGDGTTTATILAQSIYYEGSKLVAAGANPMALKRGIEKAVQVVVDELKKISKPTKDQKEIAQVGTISANNDPTIGNIIAEAMNKVGKEGVITVEEAKAMETTLEVVEGMQFDRGYISPYF 203          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 95/203 (46.80%), Postives = 140/203 (68.97%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AKD+ F + +R  +  G+D ++DAV +TLGP+GRNVV+D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASK ND AGDGTTTA+VLA+ I++ G+ SV +G NP+ LKRGID  V  +VE+L+ ++ P+ G  +I  V  ISA  D  +G  IA+A++KVG +GV+++              GM+  +GY+SP F
Sbjct:    2 AAKDVKFSRDARERILKGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELKDKFENMGAQMLREVASKANDKAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGIDLAVTKVVEDLKARSTPVSGSSEIAQVGIISANGDVEVGEKIAEAMEKVGKEGVITVEEAKGLEFELDVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_BURXL (60 kDa chaperonin 1 OS=Burkholderia xenovorans (strain LB400) GN=groL1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.349e-48
Identity = 97/203 (47.78%), Postives = 138/203 (67.98%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AKD+ F   +RA M  G++ +++AV +TLGP+GRNVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   +EEL K ++P     +I  V  ISA +D  IG  IA+A+DKVG +GV+++              GM+  +GY+SP F
Sbjct:    2 AAKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVFAAIEELRKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.681e-48
Identity = 101/208 (48.56%), Postives = 146/208 (70.19%), Query Frame = 1
Query:  187 VRASAKDIAFDQRSRAA--MQAGIDKVSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            V A AK++ F++   A   +Q G++K++D VG+TLGP+GRNVVL+ ++GSPK+VNDGVT+A+ +EL DP+EN GA L+R+ A+KTND AGDGTTT+ VLA+ +I  G+  V +GANPV + RGI+KT   LV EL+K ++ +E   ++  VA +SAGN+  +G MIA+A+ KVG  GV+++              GM+  +GYISP F
Sbjct:   46 VSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVED-SELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGKSAENSLYVVEGMQFDRGYISPYF 252          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.681e-48
Identity = 97/203 (47.78%), Postives = 141/203 (69.46%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AK++ F   +RA M  G++ +++AV +TLGP+GRNVV++  FG+P V  DGV++A+ IEL D ++N GA L++EVASKT+D+AGDGTTTA+VLA+ I++ G   V +G NP+ LKRGIDK V  LV EL+K ++P     +I  V +ISA  D+ IG +IADA+DKVG +GV+++              GM+  +GY+SP F
Sbjct:    2 AAKEVVFGGEARARMVEGVNILANAVKVTLGPKGRNVVIERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGINPMDLKRGIDKAVTALVAELKKASKPTTTSKEIAQVGSISANADETIGKLIADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_RHOS1 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=groL PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.681e-48
Identity = 96/203 (47.29%), Postives = 139/203 (68.47%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AKD+ FD  +R  M  G++ ++DAV +TLGP+GRNVV+D+ FG+P++  DGV++A+ IEL+D  EN GA +++EVAS+TND AGDGTTTA+VLA+ IIK GL +V +G NP+ LKRGID     +VE ++  ARP+    ++  V TISA  +  IG  IA+A+ KVG +GV+++              GM+  +GY+SP F
Sbjct:    2 AAKDVKFDTDARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIIKEGLKAVAAGMNPMDLKRGIDLATSKVVEAIKAAARPVNDSHEVAQVGTISANGEAQIGRFIAEAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_PORYE (60 kDa chaperonin, chloroplastic OS=Porphyra yezoensis GN=groL PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.681e-48
Identity = 95/202 (47.03%), Postives = 146/202 (72.28%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +K I +   +R A++ G+D +++AV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ I L + +EN G ALIR+ ASKTND AGDGTTTA+VLA  I+K G+ +V +G+NP+++K+GI+K  + +V ++ + A+P+E    I  VA++S+GND  +G MIA+AI+KVG +GV+S+              GM+  +G+ISP F
Sbjct:    2 SKQILYQDDARKALEKGMDILTEAVSVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEISLENHIENTGVALIRQAASKTNDVAGDGTTTATVLASAIVKQGMRNVAAGSNPMAIKKGIEKATNFVVSKIAEYAKPVEDTKAIIQVASLSSGNDIEVGKMIANAIEKVGREGVISLEEGKSTNTILEITEGMQFEKGFISPYF 203          
The following BLAST results are available for this feature:
BLAST of EY659680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ROSS14.349e-4850.7560 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-... [more]
CH602_MYCLE4.349e-4849.5060 kDa chaperonin 2 OS=Mycobacterium leprae GN=gro... [more]
CH601_SYNS34.349e-4845.7060 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_SYNFM4.349e-4848.0260 kDa chaperonin 1 OS=Syntrophobacter fumaroxidan... [more]
CH601_SPHAL4.349e-4846.8060 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]
CH601_BURXL4.349e-4847.7860 kDa chaperonin 1 OS=Burkholderia xenovorans (st... [more]
RUBB_PEA5.681e-4848.56RuBisCO large subunit-binding protein subunit beta... [more]
CH60_VEREI5.681e-4847.7860 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_RHOS15.681e-4847.2960 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_PORYE5.681e-4847.0360 kDa chaperonin, chloroplastic OS=Porphyra yezoe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659680 ID=EY659680; Name=EY659680; organism=Citrus sinensis; type=EST; length=883bp
ACTTGTTGGTACCTTATCCGAAACATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGGTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAAGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAAGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAAACTACTGNT
GAAAGTGAGGAAGGAATGGAGATNNGACAGGGGTACATCTCTCCTCAGTT
TTCACAAACCCTGAGAAATTATTGTTGAATTTGAAATGCTAGAGTGCTGG
TCACGATCAAAAATTTCTGCAATAAGGAATATT
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