EY659680

Overview
NameEY659680
Unique NameEY659680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659680_ssr724 microsatellite EY659680_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:113..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_DESHD (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 104/199 (52.26%), Postives = 149/199 (74.87%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYIS 792
            AK I F++ +R A++ G++ ++++V +TLGP+GRNVVLD+ FG+P + NDGVTIAR IEL DP EN GA L++EVA+KTND AGDGTTTA+VLA+ II+ GL +V +GANP+ +KRGI+K V  +VE+++  A+PIE ++ I  VA+ISAG DD IG +I+DA++KVG DGV+++              GM+  +GY+S
Sbjct:    2 AKQIVFNEEARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVEDIKTNAKPIESKESIAQVASISAG-DDNIGVLISDAMEKVGKDGVITVEEAKGMTTELKVVEGMQFDRGYLS 199          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 113/227 (49.78%), Postives = 158/227 (69.60%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS-QTLRNYC*I*NARVLVTIKNFCN 873
            AK + F + +R +MQ G+DK++D V +TLGP+GRNVVLD+ FGSP + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+EG++DI  VA ISA  D+ IG +IADA++KVG +GV++I              GM+  +GY+SP  S  T +    + N  +L+T K   N
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAA-DEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSPYMSTDTEKMEAVLDNPYILITDKKIGN 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_TRIEI (60 kDa chaperonin 2 OS=Trichodesmium erythraeum (strain IMS101) GN=groL2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 106/203 (52.22%), Postives = 148/203 (72.91%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS 804
            AK I +++ +R A++ G+D ++++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G +LIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GANP++LKRGIDK    LVE++ + AR IE    I  V  ISAGND+ +G MIA+A+DKVG +GV+S+              GM   +GYISP F+
Sbjct:    2 AKRIIYNENARRALEKGMDILAESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHVENTGVSLIRQAASKTNDAAGDGTTTATVLAHAMVKEGLRNVAAGANPIALKRGIDKAAGFLVEKIAEHARQIEDSKAIAQVGAISAGNDEEVGKMIAEAMDKVGKEGVISLEEGKSMQTELEITEGMRFDKGYISPYFA 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 207.608 bits (527), Expect = 7.660e-53
Identity = 110/223 (49.33%), Postives = 154/223 (69.06%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVTIK 861
            AK I ++  +R A++ G+D +++AV +TLGP+GRNVVL++ FGSP+++NDG+TIA+ IEL D +EN G +LIR+ ASKTND AGDGTTTA+VLA  I+K GL +V +GANP+SLKRGIDK    LV  +++ A+P+     I  V  ISAGND+ +G MIA+A+DKVG +GV+S+              GM   +GYISP F +   R    + + R+L+T K
Sbjct:    2 AKSIIYNDEARRALERGMDILAEAVAVTLGPKGRNVVLEKKFGSPQIINDGITIAKEIELEDHVENTGVSLIRQAASKTNDVAGDGTTTATVLAHAIVKEGLRNVAAGANPISLKRGIDKATDFLVARIKEHAQPVGDSKAIAQVGAISAGNDEEVGQMIANAMDKVGQEGVISLEEGKSMTTELEITEGMRFDKGYISPYFVTDAERMEAVLEDPRILITDK 224          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 102/200 (51.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISP 795
            AK++ F + +R A++ G+D +++AV +TLGP+GRNVVL++ FG+P + NDGV+IAR IEL +  EN GA  ++EVA+KTND AGDGTTTA+VLA+ I K GL +V +GANP+ LKRGI+K V  LVEE+++ ++P+EG++ +  VA ISAGND+ +G +IA+A++KVG DGV+S+              GM+  +GY+SP
Sbjct:    2 AKELKFSEDARRALERGVDTLANAVKVTLGPKGRNVVLEKSFGAPTITNDGVSIAREIELENHYENMGAQTVKEVATKTNDVAGDGTTTATVLAQAIFKEGLKNVAAGANPMILKRGIEKAVQKLVEEIKELSKPVEGKEAVSQVAAISAGNDEEVGKLIAEAMEKVGQDGVISVEESKSMGTSLDVVEGMQFDRGYLSP 201          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_CHLTE (60 kDa chaperonin OS=Chlorobium tepidum GN=groL PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 105/203 (51.72%), Postives = 144/203 (70.94%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AKDI FD  +R  ++ G+DK+++AV +TLGP GRNV++D+ FG+P    DGVT+A+ IEL DP+EN GA ++REVASKT+D AGDGTTTA+VLA+ I + GL +VT+GA P+ LKRGID+ V  +V EL   +R I G+ +I  V TISA ND  IG +IA+A+DKVG DGV+++              GM+  +GY+SP F
Sbjct:    2 TAKDILFDAEARTKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELVDPVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_SALRD (60 kDa chaperonin 1 OS=Salinibacter ruber (strain DSM 13855) GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 102/202 (50.50%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            AK I FD  +R+A+Q G+D++++AV +TLGP+GRNVVL++ FG+P +  DGVT+A+ IEL + + N GA +++E ASKTND AGDGTTTA+VLA+ +I  G+ SVTSGANP+ +KRGI      +V  L  ++ P+EG+D I  VATISA NDD IG +IADA ++VG DGV+++              GM+  +GY+SP F
Sbjct:   15 AKQIRFDSDARSALQEGVDQMAEAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEERLPNIGAQVLKEAASKTNDDAGDGTTTATVLAQSVINAGMKSVTSGANPMDVKRGITAAAEEVVTHLRNQSDPVEGKDRISQVATISANNDDAIGDLIADAFERVGQDGVITVEEARGIETYLDVVEGMQFDRGYLSPYF 216          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 103/203 (50.74%), Postives = 149/203 (73.40%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS 804
            AK I +++++R A++ GID ++++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LVE+++  ++PI   + I    TI+AGND+ +G MIADA+DKVG +GV+S+              GM   +GYISP F+
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATEFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFA 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 104/203 (51.23%), Postives = 146/203 (71.92%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            +AK I F+  +R A++ G+DK++DAV +TLGP+GRNV++++ FG+P V  DGVT+A+ IEL D +EN GA +++EVASKT+D AGDGTTTA+VLA+ I+  GL SVT+GANP+ LKRGIDK V  +V EL K ++ ++ ++ I  VATISA  D  IG +IADA +KVG DGV+++              GM+  +GY+SP F
Sbjct:    2 AAKQITFNADARMALKRGVDKLADAVKVTLGPKGRNVIIEKKFGAPTVTKDGVTVAKEIELEDKLENVGAQMVKEVASKTSDVAGDGTTTATVLAQAILTAGLKSVTAGANPMDLKRGIDKAVEVVVAELRKMSQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEAKGTETTLEVVEGMQFDRGYLSPYF 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 104/200 (52.00%), Postives = 146/200 (73.00%), Query Frame = 1
Query:  196 SAKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYIS 792
            +AK ++ D ++R A+  G+D V+D V +TLGP+GRNVVL++ FG+P + NDGVTIA+ I+L DP EN GA L++EVASKTND AGDGTTTA+VLA+ ++  G+  V +GANP+ +KRGI+K V  +VEEL+K A+P+E + DI  VA ISA ND+ IG +IA+A+DKVG DGV+++              GM+  +GY+S
Sbjct:    2 AAKLVSLDMQARTALIKGLDTVADTVKITLGPKGRNVVLEKKFGAPVITNDGVTIAKEIDLEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQALVHEGMKHVVAGANPMYVKRGIEKAVEKVVEELKKIAKPVETKQDIAHVAAISANNDEEIGNLIAEAMDKVGKDGVITVEESQGITTTLELVEGMQFDRGYLS 201          
The following BLAST results are available for this feature:
BLAST of EY659680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESHD7.660e-5352.2660 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_CLOBA7.660e-5349.7860 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH602_TRIEI7.660e-5352.2260 kDa chaperonin 2 OS=Trichodesmium erythraeum (s... [more]
CH601_SYNY37.660e-5349.3360 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_HALOH1.000e-5251.0060 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_CHLTE1.000e-5251.7260 kDa chaperonin OS=Chlorobium tepidum GN=groL PE... [more]
CH601_SALRD1.000e-5250.5060 kDa chaperonin 1 OS=Salinibacter ruber (strain ... [more]
CH601_PROMT1.000e-5250.7460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_RHOMR1.307e-5251.2360 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_DICTD1.307e-5252.0060 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659680 ID=EY659680; Name=EY659680; organism=Citrus sinensis; type=EST; length=883bp
ACTTGTTGGTACCTTATCCGAAACATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGGTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAAGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAAGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAAACTACTGNT
GAAAGTGAGGAAGGAATGGAGATNNGACAGGGGTACATCTCTCCTCAGTT
TTCACAAACCCTGAGAAATTATTGTTGAATTTGAAATGCTAGAGTGCTGG
TCACGATCAAAAATTTCTGCAATAAGGAATATT
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