EY659680

Overview
NameEY659680
Unique NameEY659680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659680_ssr724 microsatellite EY659680_ssr724:724..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig892 contig Csv1_Contig892:113..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 103/203 (50.74%), Postives = 149/203 (73.40%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS 804
            AK I +++++R A++ GID ++++V +TLGP+GRNVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LVE+++  ++PI   + I    TI+AGND+ +G MIADA+DKVG +GV+S+              GM   +GYISP F+
Sbjct:    2 AKRIIYNEQARRALERGIDILAESVAVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATDFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFA 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 106/203 (52.22%), Postives = 147/203 (72.41%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS 804
            AK I +++ +R A++ G+D + ++V +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K G+ +V +GAN +SLKRGI+K    LVE++ + AR +E    I  V TISAGNDD +G MIA+A+DKVG +GV+S+              GM   +GYISP F+
Sbjct:    2 AKRIIYNENARRALEKGMDILCESVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDNIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGMRNVVAGANAISLKRGIEKAAGFLVEKIAENARSVEDSTAIAQVGTISAGNDDEVGQMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFEKGYISPYFA 204          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_GEOTN (60 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 111/227 (48.90%), Postives = 158/227 (69.60%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISP-QFSQTLRNYC*I*NARVLVTIKNFCN 873
            AK+I F + +R AM  G+DK++DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+ ++RGI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+++              GM+  +GY+SP   + T +    + N  +L+T K   N
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVAAGANPMGIRRGIEKAVAVAVEELKAISKPIKGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYVSPYMITDTEKMEAVLENPYILITDKKVSN 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 103/199 (51.76%), Postives = 149/199 (74.87%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYIS 792
            AK I F++ +R A++ G++ ++++V +TLGP+GRNVVLD+ FG+P + NDGVTIAR IEL DP EN GA L++EVA+KTND AGDGTTTA+VLA+ II+ GL +V +GANP+ +KRGI+K V  +V++++  A+PIE ++ I  VA+ISAG DD IG +I+DA++KVG DGV+++              GM+  +GY+S
Sbjct:    2 AKQIVFNEEARRALERGVNALAESVRVTLGPKGRNVVLDKKFGAPLITNDGVTIAREIELEDPFENMGAQLVKEVATKTNDVAGDGTTTATVLAQAIIREGLKNVAAGANPMGIKRGIEKAVESVVDDIKTNAKPIESKESIAQVASISAG-DDNIGVLISDAMEKVGKDGVITVEEAKGMTTELKVVEGMQFDRGYLS 199          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_BACTR (60 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groL PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 111/227 (48.90%), Postives = 158/227 (69.60%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISP-QFSQTLRNYC*I*NARVLVTIKNFCN 873
            AK+I F + +R AM  G+DK++DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+++              GM+  +GY SP   + T +    + N  +L+T K   N
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFTTELDVVEGMQFDRGYASPYMITDTEKMEAVLENPYILITDKKISN 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 108/223 (48.43%), Postives = 161/223 (72.20%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF-SQTLRNYC*I*NARVLVTIK 861
            +K I+F   SR +++AGI+ ++DAV +TLGP+GRNV+L+ ++G+P++VNDG+T+A+ IEL++P ENAGA LI+EVASKT + AGDGTTTA+++A+ +++ GL +V +GANPV+L+RGI+K    LV+E+E  A+P+EG   I  VAT+S+GND  +G MIADA+DKV  DGV+++              GM+  +GYISP F + + R      N  +L+T K
Sbjct:    2 SKLISFKDESRRSLEAGINALADAVRITLGPKGRNVLLEKQYGAPQIVNDGITVAKEIELSNPEENAGAKLIQEVASKTKEIAGDGTTTATIIAQALVREGLRNVAAGANPVALRRGIEKVTTFLVQEIEAVAKPVEG-SAIAQVATVSSGNDPEVGAMIADAMDKVTKDGVITVEESKSLNTELEVVEGMQIDRGYISPYFITDSDRQLVEFDNPLILITDK 223          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.229e-52
Identity = 112/227 (49.34%), Postives = 157/227 (69.16%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQFS-QTLRNYC*I*NARVLVTIKNFCN 873
            AK + F + +R +MQ G+DK++D V +TLGP+GRNVVLD+ FGSP + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+EG++DI  VA ISA  D+ IG +IADA++KVG +GV++I              GM+  +GY+SP  S  T +    +    +L+T K   N
Sbjct:    2 AKMLKFGEDARRSMQVGVDKLADTVKVTLGPKGRNVVLDKKFGSPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPMLIRNGIRMAVDKAVEEIKKISKPVEGKEDIARVAAISAA-DEEIGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSPYMSTDTEKMEAILDTPYILITDKKITN 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_BACST (60 kDa chaperonin OS=Bacillus stearothermophilus GN=groL PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.229e-52
Identity = 110/223 (49.33%), Postives = 158/223 (70.85%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISP-QFSQTLRNYC*I*NARVLVTIK 861
            AK+I F + +R AM  G+DK++DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+  ++PI+G++ I  VA ISA  D+ +G +IA+A+++VG DGV+++              GM+  +GY+SP   + T +    + N  +L+T K
Sbjct:    2 AKEIKFSEEARRAMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIQGKESIAQVAAISAA-DEEVGQLIAEAMERVGNDGVITLEESKGFATELDVVEGMQFDRGYVSPYMITDTEKMEAVLENPYILITDK 223          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.229e-52
Identity = 114/227 (50.22%), Postives = 156/227 (68.72%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISP-QFSQTLRNYC*I*NARVLVTIKNFCN 873
            AKDI F + +R +M  G+DK++DAV +TLGP+GRNVVL++ FGSP + NDGVTIA+ IEL D  EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VTSGANP+ +++GI+K     VEEL K ++PIEG+D I  VA IS+  DD +G +IA+A+++VG DGV++I              GM+  +GY SP   + + +    + N  VL+T K   N
Sbjct:    2 AKDIKFSEDARRSMLRGVDKLADAVKVTLGPKGRNVVLEKKFGSPLITNDGVTIAKEIELEDAFENMGAKLVAEVASKTNDIAGDGTTTATVLAQAMIREGLKNVTSGANPMVIRKGIEKATQVAVEELSKISKPIEGKDSIAQVAAISSA-DDEVGKIIAEAMERVGNDGVITIEESKGFSTELEVVEGMQFDRGYASPYMVTDSDKMEAVLDNPYVLITDKKISN 227          
BLAST of EY659680 vs. ExPASy Swiss-Prot
Match: CH602_SALRD (60 kDa chaperonin 2 OS=Salinibacter ruber (strain DSM 13855) GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.229e-52
Identity = 102/202 (50.50%), Postives = 142/202 (70.30%), Query Frame = 1
Query:  199 AKDIAFDQRSRAAMQAGIDKVSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKKARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIXXXXXXXXXXXXXXGMEXXQGYISPQF 801
            AK I FD  +R+A+Q G+D+++ AV +TLGP+GRNVVL++ FG+P +  DGVT+A+ IEL + + N GA +++E ASKTND AGDGTTTA+VLA+ +I  G+ SVTSGANP+ +KRGI      +V  L  ++ P+EG+D I  VATISA NDD IG +IADA ++VG DGV+++              GM+  +GY+SP F
Sbjct:    2 AKQIKFDSDARSALQEGVDQMAKAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEERLPNIGAQVLKEAASKTNDDAGDGTTTATVLAQSVINAGMKSVTSGANPMDVKRGITAAAEEVVTHLRNQSDPVEGKDRISQVATISANNDDAIGDLIADAFERVGQDGVITVEEARGIETYLDVVEGMQFDRGYLSPYF 203          
The following BLAST results are available for this feature:
BLAST of EY659680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROM11.307e-5250.7460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_ACAM11.307e-5252.2260 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH60_GEOTN1.706e-5248.9060 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH60_DESHY1.706e-5251.7660 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH60_BACTR1.706e-5248.9060 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH602_SYNY31.706e-5248.4360 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH60_CLOBB2.229e-5249.3460 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_BACST2.229e-5249.3360 kDa chaperonin OS=Bacillus stearothermophilus G... [more]
CH60_BACHD2.229e-5250.2260 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH602_SALRD2.229e-5250.5060 kDa chaperonin 2 OS=Salinibacter ruber (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659680 ID=EY659680; Name=EY659680; organism=Citrus sinensis; type=EST; length=883bp
ACTTGTTGGTACCTTATCCGAAACATTTCCCTCAGCAGACCCTTTACTCC
GTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGCCCTTTCTTCGGCTT
CCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAG
AATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGC
CAAAGATATTGCTTTTGACCAGAGGTCCAGGGCCGCAATGCAGGCCGGCA
TCGATAAGGTTTCCGATGCTGTTGGCCTTACTCTTGGTCCAAGAGGGAGA
AATGTTGTTCTGGATGAATTTGGGAGTCCGAAAGTGGTTAATGATGGAGT
AACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTG
CTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGAT
GGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGACT
CCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTG
ATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAAGGCCAGGCCT
ATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAA
TGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAAGTTGGTC
CTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAAACTACTGNT
GAAAGTGAGGAAGGAATGGAGATNNGACAGGGGTACATCTCTCCTCAGTT
TTCACAAACCCTGAGAAATTATTGTTGAATTTGAAATGCTAGAGTGCTGG
TCACGATCAAAAATTTCTGCAATAAGGAATATT
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