EY659643

Overview
NameEY659643
Unique NameEY659643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659643 vs. ExPASy Swiss-Prot
Match: PSMD3_ANOST (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.979e-42
Identity = 101/249 (40.56%), Postives = 142/249 (57.03%), Query Frame = 3
Query:   15 PAPAKHPLP-ELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLMSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP-VAALGFRVQCNKWAIIVRLLLXDIPERTVFMQIGMEKALXAIFELTNAVRIGDXELFKSXAEKVSSTFSSDRTHTXIVGCXH 755
            P   K P   E++ Y +LL+L+ L+DK    +A  CS   +A++   NRR++D++AA+ YFY+S   EL  DL  IR  L +  R ATLR+D  GQ                 DQA+KL++K+   E  SN +  R+L+YLG+I+  +LEY+ A + L+QA RKAP  AA+GFR    K  I+V LLL DIPER VF Q  + ++L   F+LT AVR+G+ + F    E     F  D T T I+   H
Sbjct:  119 PGSDKSPFAQEVDAYFHLLLLVRLLDKNDLPKATKCSQDLMAKIVGQNRRSLDLIAAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRLRH 367          
BLAST of EY659643 vs. ExPASy Swiss-Prot
Match: RPN3_SCHPO (Probable 26S proteasome regulatory subunit rpn3 OS=Schizosaccharomyces pombe GN=rpn3 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.691e-37
Identity = 95/247 (38.46%), Postives = 131/247 (53.04%), Query Frame = 3
Query:   39 PELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLMSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFRVQCNKWAIIVRLLLXDIPERTVFMQIGMEKALXAIFELTNAVRIGDXELFKSXAEKVSSTFSSDRTHTXIVGCXHMSLXLG 773
            PE+++Y  LL+ + L   ++Y          IARL++ +RRT+D +AA+LYFYY L +E      E R  LL++HR A+LRHD   Q                 DQA++L+SK       SN    RY +YLG+IR IQL+YT A E L+ A RKAP  V A+ F     K  I+V+LL+ +IPER +F Q  +EK L     ++ AVRIGD   F     K  + F  D  +T I    H  +  G
Sbjct:  123 PEVDMYLQLLLSMTLYYNEKYEVGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVLTLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTG 369          
BLAST of EY659643 vs. ExPASy Swiss-Prot
Match: PSMD3_CAEEL (26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis elegans GN=rpn-3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.461e-30
Identity = 82/236 (34.75%), Postives = 119/236 (50.42%), Query Frame = 3
Query:   39 PELEIYCYLLVLIFLIDKKRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLMSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLXDIPERTVFMQIGMEKALXAIFELTNAVRIGDXELFKSXAEKVSSTFSSDRTHTXIV 743
            PE + Y  LLVL+ L  +K+  EA A     +  + N +RRT+D LAA+  ++  + YE  G L + +G L +  R ATLR+    Q                   A  L+SK    +  SN    RY++Y G+I+ +QL+Y  A    LQA RKAP   A+GF+    KW +++ LL  +IP+R+VF Q    K L    +L+  VR GD   F    E+  + F +D T T IV
Sbjct:  129 PESDCYLRLLVLLHLYAQKKNTEALALGENQLTSIYNFDRRTLDGLAAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLICWLLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQAQRKAPQEGAIGFKQAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQFEADDTLTLIV 364          
BLAST of EY659643 vs. ExPASy Swiss-Prot
Match: RPN3_YEAST (26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae GN=RPN3 PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 3.424e-22
Identity = 76/250 (30.40%), Postives = 119/250 (47.60%), Query Frame = 3
Query:   42 ELEIYCYLLVLIFLIDKKRYNEAKACSSASIAR--LKNMNRRTVDVLAARLYFYYSLCYELTGDLAE----------IRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLMSKA--PRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP--VAALGFRVQCNKWAIIVRLLLXDIPERTVFMQIGMEKALXAIFELTNAVRIGDXELFKSXAEKVSSTFSSDRTHTXIV 743
            E+  + +LLV +FL D K   +    +   +    L   N R+++++ A+L+FY  L +E     +E          +R  ++   +IA+L+HD   +                 D A   +SK   P  +  S+ +  RY FYL KI  IQL+Y+ A E ++ A RKAP    +LGF  Q NK    ++LL+ DIPE + F Q  M+K+L   + LT AV++ D + F S   K       D T+   V
Sbjct:  133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLE-ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLSDLKKFTSTITKYKQLLLKDDTYQLCV 381          
The following BLAST results are available for this feature:
BLAST of EY659643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSMD3_ANOST2.979e-4240.56Probable 26S proteasome non-ATPase regulatory subu... [more]
RPN3_SCHPO1.691e-3738.46Probable 26S proteasome regulatory subunit rpn3 OS... [more]
PSMD3_CAEEL4.461e-3034.7526S proteasome non-ATPase regulatory subunit 3 OS=... [more]
RPN3_YEAST3.424e-2230.4026S proteasome regulatory subunit RPN3 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659643 ID=EY659643; Name=EY659643; organism=Citrus sinensis; type=EST; length=939bp
CATCATCTGGAGCTCCAGCCCCTGCAAAACATCCTTTGCCGGAGTTAGAG
ATTTACTGCTACTTGCTTGTGCTTATATTTTTGATTGATAAGAAGAGATA
CAATGAGGCTAAAGCTTGTTCATCGGCAAGCATTGCACGGTTGAAGAACA
TGAATAGGAGAACTGTTGATGTATTAGCTGCCAGACTTTACTTCTATTAC
TCTCTTTGCTATGAACTCACTGGTGATCTTGCTGAAATTAGAGGGAATCT
ACTTGCCCTCCACCGAATTGCAACATTGCGCCATGATGAGCTGGGGCAGG
AAACACTTCTCAACCTGCTACTTCGCAATTACCTCCATTACAATTTGTAT
GATCAAGCTGAGAAACTTATGTCAAAGGCACCTCGATTTGAAGCTCACTC
AAACCAGCAGTTTTGTCGATACCTCTTTTACTTGGGAAAGATTAGGACAA
TACAGCTGGAGTACACAGATGCCAAAGAATCCCTCCTTCAAGCTGCTCGG
AAAGCCCCCGTTGCAGCCCTTGGCTTCCGAGTTCAATGCAACAAGTGGGC
AATCATTGTCCGATTATTGCTANGAGATATTCCTGAGAGGACTGTCTTTA
TGCAGATAGGCATGGAGAAGGCTTTGANGGCCATATTTGAGCTTACGAAT
GCTGTGCGCATTGGGGATNNTGAGCTATTTAAGTCAGNTGCTGAGAAAGT
CTCAAGTACTTTCAGCTCTGACCGAACCCATACTNNGATTGTAGGCTGCN
NGCATATGTCATTANGACTGGGNTGCNGGACATCAGCATCTCGTATTCTC
GCATCTCACTTTGCTGATGTGNCAAGAAGCTGAGATGGNACTCTGGNCAT
CCTGTTGCTGATGCTGAAATAATTGNTTCAAGGCAATTCGAGATGGTGCG
ATTGATGCACAGTGGATCATGCAATGGGCTGGATGTGTC
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