EY659641

Overview
NameEY659641
Unique NameEY659641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length986
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659641_ssr332 microsatellite EY659641_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659641 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.364e-16
Identity = 64/208 (30.77%), Postives = 95/208 (45.67%), Query Frame = 2
Query:  272 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLRNRTGHPYTVQTNIYANGKGD--REQRVNLWFDPCCRLSP*TLFSGNHQPYWFLWG*CAHQGLPKTGEGAPFPRTHPWWGFNPGGTQDWATGGGPKKIDGSKGPFMVFTKTLIWRGAKVLD 883
            P  F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+  DELD EFL N  G P+  QTN+Y NG  +  RE+R  LWFDP       ++     +  +++      + L K      +P+              WAT GG   +D +  PF+   K +   G  V D
Sbjct:   37 PIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSD 244          
BLAST of EY659641 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.177e-14
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  278 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLRNRTGHPYTVQTNIYANGKGDREQRVNLWFDPCCRLSP*TLFSGNHQPYWFLW 685
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ L  + G PY + TN+Y  G+G ++QR  LWFDP          + ++  Y FLW
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQIL-GKNGPPYLLNTNMYLYGEGGKDQRFRLWFDP----------TKDYHSYSFLW 145          
The following BLAST results are available for this feature:
BLAST of EY659641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH29_ARATH1.364e-1630.77Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH2.177e-1436.03Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-E02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659641 ID=EY659641; Name=EY659641; organism=Citrus sinensis; type=EST; length=986bp
TGGTNCGACCAGCCAGTTTCGGTGCCGGNATTCCCGGCCCCGACCCACGC
GTCCGTCTCCCGCGTCTATATAAATACACACTTCCCACAACGCTTCTAAA
CCATACTCAGCATACATAACCACAACATATAATTAAAGATCTCTTTCTAA
TTAGTAACAGATAATATTTTATTGTACGGCTTGTTTTACAGCTATGGCTA
TCCTAAGAAATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCC
TGCTCTTGCGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGT
CACATGGTCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCC
AGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAG
TACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTC
TGCTGGAACTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGTGA
GAGACGAGCTTGATTTTGAGTTCCTGAGAAACCGAACGGGGCATCCTTAC
ACGGTCCAAACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAG
AGTGAACCTCTGGTTTGACCCCTGCTGCAGATTATCACCTTGAACACTAT
TCTCTGGAAACCATCAACCATATTGGTTTCTATGGGGATGATGTGCCCAT
CAGGGGTTACCAAAAACAGGGGAAGGGGCTCCTTTTCCAAGAACCCACCC
CTGGTGGGGTTTCAACCCTGGGGGAACCCAAGACTGGGCAACAGGAGGGG
GGCCTAAAAAAATAGATGGGAGCAAAGGCCCTTTTATGGTTTTTACAAAG
ACTCTGATTTGGAGGGGGGCCAAGGTCCTGGACCACAAACTGGGCCTCGA
ACCGTGAACGGTGGGGGGGAAATAATTTAAACCTCCCCCGCTGGGAACAA
AAAAACAAGTGGTGGCCTTAAACCTGATCTTGTTTT
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