EY659635

Overview
NameEY659635
Unique NameEY659635
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659635_ssr38 microsatellite EY659635_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7291 contig Csv1_Contig7291:63..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659635 vs. ExPASy Swiss-Prot
Match: CHAC_SCHPO (Cation transport regulator-like protein OS=Schizosaccharomyces pombe GN=SPBC31F10.03 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.294e-16
Identity = 64/195 (32.82%), Postives = 89/195 (45.64%), Query Frame = 1
Query:  175 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQE-------------TICWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HXDDYIIXLANEVRKEL 711
            WVFGYGSL+W+P   YD  I  FIK Y R F +   DHRGT   P    TL   +E               CWG+A+ +   P K    + EYL+ RE    +   V  Y       P L   +V+  T     +  +     L +MA+ I+T  G  G+N  YLF+L K +  +     D ++  L  EVRK++
Sbjct:   11 WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVLENCLVYVGTS---KSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPESKDIHVFELEAEVRKQM 199          
BLAST of EY659635 vs. ExPASy Swiss-Prot
Match: CHAC_ECOLI (Cation transport protein chaC OS=Escherichia coli (strain K12) GN=chaC PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.763e-14
Identity = 58/179 (32.40%), Postives = 80/179 (44.69%), Query Frame = 1
Query:  175 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHXDDYIIXLANEVRKEL 711
            W+FGYGSL+WNP  E+ E   G +  + R F L     RGT   P R   L++   T   GVAY +   PE E L  E     + E  +   +  + + +         IVF   P    +  Y      + +A  IA A GP G N  YLF LE+ +  +G  DD +  L   V+K L
Sbjct:   48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT--GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLL 217          
BLAST of EY659635 vs. ExPASy Swiss-Prot
Match: CHAC_YEAST (Cation transport regulator-like protein OS=Saccharomyces cerevisiae GN=YER163C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.121e-12
Identity = 55/198 (27.78%), Postives = 84/198 (42.42%), Query Frame = 1
Query:  175 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------------------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 648
            WV GYGSL++ P   Y  +I   I  + R F  +  DHRGTP +P R  TL                         +   + +  GV Y +   PE  +   EYL  RE    +   V+ + E      A  G               V++ +     + N+ ++GP  ++E A+ IA + GP G+N +YL KLE+A+
Sbjct:    9 WVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQAL 204          
The following BLAST results are available for this feature:
BLAST of EY659635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC_SCHPO8.294e-1632.82Cation transport regulator-like protein OS=Schizos... [more]
CHAC_ECOLI7.763e-1432.40Cation transport protein chaC OS=Escherichia coli ... [more]
CHAC_YEAST1.121e-1227.78Cation transport regulator-like protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659635 ID=EY659635; Name=EY659635; organism=Citrus sinensis; type=EST; length=947bp
AATTCCCGGCCTCGACCCACGCGTCCGGGGNATATATAGAGAGAGAGAGG
AAGCGAAGAGACACTAGAAAGAGAGAATACAGAATCCTAACCTTAGGCGT
TTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTTTCTCTC
GCGATTTCCTTGAAAATGGTGTTCTGGGTTTTTGGGTATGGATCATTGGT
GTGGAACCCAGGGTTTGAATATGATGAGAAAATTTTAGGCTTCATCAAGG
ACTACAGGCGCGTGTTTGATCTTGCATGCATTGATCACAGGGGTACACCT
CAACACCCGGCTAGAACTTGCACGCTGGAAAAATCTCAAGAAACCATTTG
TTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCCTGAAAAGGAAAGACTCG
CTATGGAGTATTTGGAACGAAGAGAATGCGAGTACGACTCTAAGACCCTT
GTAGACTTTTACAGGGAAGGGGAGCCTTCACAGCCGGCTCTAACTGGGGT
TATAGTTTTCACGTCTACTCCAGACAAAGTATCAAACAAGTATTATCTGG
GGCCTGCTCCATTGGAGGAAATGGCTAGGCAAATTGCAACGGCTGTCGGA
CCCTGTGGAAACAATAGAGACTACCTTTTCAAGTTGGAGAAGGCCATGTT
TGATATTGGTCATGANGACGACTACATAATANAGCTGGCAAATGAAGTGA
GGAAAGAGCTTGGAACTGCTGAAAAAGGATTCTCAAGGAGAGGAAGTTGN
TTGGGTCATCATCCCCGATGCCGCTCACAAATCTCATATGCCAACCCTTC
ACCTGGGTCTACGCCCTGGAGCGGTGGGCCTGGGTTCATAAAGACACCAG
GCTGACAGACCCCATAGCCTAGGGGACTAATCAAAGATATCAAGCAACGT
GACCTAACCCCATCGCCATCTCCTTGGTTTCTTCTTTTTTTTTCAAC
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