EY659619

Overview
NameEY659619
Unique NameEY659619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:67..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.131e-18
Identity = 70/207 (33.82%), Postives = 96/207 (46.38%), Query Frame = 2
Query:  134 SSRKGS----FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLA 739
            SSR G     F   A ++  V   A+   WF  +   ++LDGS PGD+GFDPLGL+  PE    F E       E+ + R+AML   G + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           EK         YPGG  F+PLG +KD    E+ KL+ +KNGRLA
Sbjct:   22 SSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDP-----------EK-------KKYPGG-AFDPLGFSKDPAKFEELKLKEIKNGRLA 198          

HSP 2 Score: 31.5722 bits (70), Expect = 1.131e-18
Identity = 15/33 (45.45%), Postives = 20/33 (60.61%), Query Frame = 1
Query:  730 KIGMLAILGYLVQ-GLVTGVGPYQNPLDHLADP 825
            ++ MLA +G+ VQ     G GP +N   HLADP
Sbjct:  196 RLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 78/222 (35.14%), Postives = 110/222 (49.55%), Query Frame = 2
Query:  164 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            +AST P   G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   52 SASTSPW-YGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPEN---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 247          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 78/230 (33.91%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   37 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 75/213 (35.21%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S Q+ SYL+G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G I PE+L K   +  +  + WF+ G  I   G  +Y  +P  +           ++ LMG  E  R      PG               G G+  YPGG  F+PLGLA D     + K++ +KNGRLA +  +    + ++   GP
Sbjct:   49 GPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 78/230 (33.91%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   38 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 242          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.212e-18
Identity = 78/222 (35.14%), Postives = 108/222 (48.65%), Query Frame = 2
Query:  164 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            AAS+     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   D K++ +KNGRLA +  +    + ++   GP
Sbjct:   42 AASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVVDPLYPGG-TFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.889e-18
Identity = 74/217 (34.10%), Postives = 108/217 (49.77%), Query Frame = 2
Query:  134 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFNPLGLA---------KDEKFMEDFKLQAMKNGRLA 739
            +SRK   VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+PL LA          D   +E  KL  +K+ RLA
Sbjct:   43 TSRK--LVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLA 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.773e-18
Identity = 78/233 (33.48%), Postives = 111/233 (47.64%), Query Frame = 2
Query:  158 VRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            + AA+   +  G D  LW+           S Q+ SYL+G  PGDYG+D  GLS DPE    F   + L   EVI+GR+AMLGA+G + PE+L K  G+  +E    WF+ G  I   G  +Y  +P  +           ++ LMG  E  R                G +    G G+  YPGG  F+PLGLA D     + K++ +KNGRLA +  +    + ++   GP
Sbjct:   35 IAAATNGRITMGND--LWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 241          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.203e-18
Identity = 70/211 (33.18%), Postives = 91/211 (43.13%), Query Frame = 2
Query:  134 SSRKGSFVVRAASTPPVKQGADRPL--------WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLA 739
            SS K  F    A+  PV  GA   +        W   +   SYLDGS PGD+GFD LGL + P     + E       E+I+ R+AML   G I PE LG    +  +   A    G     G    W    T+  +E   + F EH+R                  EK    S    YPGG  F+PLG +KD    E+ K++ +KNGRLA
Sbjct:   20 SSTKSKF----AAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAA-IPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR----------------SMEK---DSEKKKYPGG-AFDPLGYSKDPAKFEELKVKEIKNGRLA 199          

HSP 2 Score: 31.9574 bits (71), Expect = 4.203e-18
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 1
Query:  730 KIGMLAILGYLVQ-GLVTGVGPYQNPLDHLADP 825
            ++ +LAI+G+ VQ     G GP +N   HLADP
Sbjct:  197 RLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.435e-18
Identity = 76/249 (30.52%), Postives = 120/249 (48.19%), Query Frame = 2
Query:   86 TARQILGARSAQFPTGSSRKGSFV-------VRAASTPP---VKQGADRPLWFASKQS------LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFNPLGLA---------KDEKFMEDFKLQAMKNGRLA 739
            T+  +L   S+ F TG ++  + +       V  A+TP    V   A +  W  + +         +LDGSLPGDYGFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPGG  F+PL LA          D + +E  K+  +K+ RLA
Sbjct:    4 TSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----TLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLA 233          
The following BLAST results are available for this feature:
BLAST of EY659619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB121_HORVU1.131e-1833.82Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2B_PINSY1.694e-1835.14Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB28_PEA1.694e-1833.91Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOLLC1.694e-1835.21Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_PEA1.694e-1833.91Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB29_MAIZE2.212e-1835.14Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB4_SPIOL2.889e-1834.10Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_HORVU3.773e-1833.48Chlorophyll a-b binding protein of LHCII type III,... [more]
CB11_SOLLC4.203e-1833.18Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_SOLLC6.435e-1830.52Chlorophyll a-b binding protein CP24 10A, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659619 ID=EY659619; Name=EY659619; organism=Citrus sinensis; type=EST; length=910bp
ATTGAAGTTTAGAAACAGAGGAAAAAAGAAATTACAAATGGCAACCCAAG
CTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATT
CTTGGAGCAAGATCAGCTCAATTCCCAACTGGGTCATCAAGAAAAGGTTC
CTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACA
GACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGC
CTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGG
CACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCA
ACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATT
CTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCA
AACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTT
ACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGG
AGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCT
CGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAG
GACCTTTATTCAACCCTCTGGGTCTTGCGAAAGATGAGAAATTCATGGAA
GATTTCAAGCTCCAGGCAATGAAGAATGGAAGATTGGCATGTTGGCCATC
TTGGGTTACCTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCCTACCAGAA
CCCATTGGATCACTTGGCTGATCCTTCCACAACAAGGTTTGCACTCCCCC
AATTTCACTGAGAGAGAATTTCTGTGCATTGCTTCGGATATTTATTCAAC
CTTGCATCCC
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