EY659619

Overview
NameEY659619
Unique NameEY659619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.435e-18
Identity = 78/230 (33.91%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   + AS+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   36 RKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.435e-18
Identity = 76/213 (35.68%), Postives = 104/213 (48.83%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   D  YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.435e-18
Identity = 75/213 (35.21%), Postives = 104/213 (48.83%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G + PE+L + G+   E    WF+ G  I   G   Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   50 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVFPELLARNGVKFGEA--VWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.405e-18
Identity = 76/225 (33.78%), Postives = 110/225 (48.89%), Query Frame = 2
Query:  155 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            V ++A +     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   39 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.405e-18
Identity = 78/230 (33.91%), Postives = 112/230 (48.70%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                   + LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + L+   GP
Sbjct:   35 RKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGP 239          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.098e-17
Identity = 77/222 (34.68%), Postives = 105/222 (47.30%), Query Frame = 2
Query:  164 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            AAS      G DR ++    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D     D K++ +KNGRLA +  +    + ++   GP
Sbjct:   55 AASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP----------------LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 251          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.098e-17
Identity = 77/230 (33.48%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   36 RKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.434e-17
Identity = 77/222 (34.68%), Postives = 105/222 (47.30%), Query Frame = 2
Query:  164 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            AAS      G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D     + K++ +KNGRLA +  +    + ++   GP
Sbjct:   55 AASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP----------------LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 251          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.434e-17
Identity = 77/230 (33.48%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   35 RKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.445e-17
Identity = 80/243 (32.92%), Postives = 114/243 (46.91%), Query Frame = 2
Query:  101 LGARSAQFPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            LG  + +    S RK   V +  S+     G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   21 LGPSAPEVGRVSMRKT--VTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236          
The following BLAST results are available for this feature:
BLAST of EY659619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2G_SOLLC6.435e-1833.91Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_TOBAC6.435e-1835.68Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_HORVU6.435e-1835.21Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_SOLLC8.405e-1833.78Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_NICPL8.405e-1833.91Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2A_PYRPY1.098e-1734.68Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_TOBAC1.098e-1733.48Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2A_PINSY1.434e-1734.68Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_TOBAC1.434e-1733.48Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB23_SOYBN2.445e-1732.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659619 ID=EY659619; Name=EY659619; organism=Citrus sinensis; type=EST; length=910bp
ATTGAAGTTTAGAAACAGAGGAAAAAAGAAATTACAAATGGCAACCCAAG
CTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATT
CTTGGAGCAAGATCAGCTCAATTCCCAACTGGGTCATCAAGAAAAGGTTC
CTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACA
GACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGC
CTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGG
CACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCA
ACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATT
CTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCA
AACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTT
ACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGG
AGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCT
CGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAG
GACCTTTATTCAACCCTCTGGGTCTTGCGAAAGATGAGAAATTCATGGAA
GATTTCAAGCTCCAGGCAATGAAGAATGGAAGATTGGCATGTTGGCCATC
TTGGGTTACCTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCCTACCAGAA
CCCATTGGATCACTTGGCTGATCCTTCCACAACAAGGTTTGCACTCCCCC
AATTTCACTGAGAGAGAATTTCTGTGCATTGCTTCGGATATTTATTCAAC
CTTGCATCCC
back to top