EY659619

Overview
NameEY659619
Unique NameEY659619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:67..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.171e-17
Identity = 79/243 (32.51%), Postives = 111/243 (45.68%), Query Frame = 2
Query:  125 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASK----------QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            P  S   GS  V    T    +G     W+ S           +S SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R    A  G +G             + D  YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   22 PAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.293e-17
Identity = 73/213 (34.27%), Postives = 104/213 (48.83%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.293e-17
Identity = 73/213 (34.27%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DRP +    S+ + SYL G  PGDYG+D   +S DPE    F + + L   EVI+ R+AMLGA+G + PE+L K GL   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G++G               DP  PGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   52 GPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKNGLKFGEA--VWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGEGL------------DPLLPGG-AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 75/230 (32.61%), Postives = 109/230 (47.39%), Query Frame = 2
Query:  140 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            RK     + AS+     G DR  +    S ++ SYL G  P DYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.585e-16
Identity = 73/213 (34.27%), Postives = 105/213 (49.30%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E                Y +  E  LG + D  YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---------------YRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.070e-16
Identity = 75/222 (33.78%), Postives = 106/222 (47.75%), Query Frame = 2
Query:  164 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            AA++     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +K GRLA    +    + ++   GP
Sbjct:   42 AAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGP 238          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.070e-16
Identity = 68/197 (34.52%), Postives = 96/197 (48.73%), Query Frame = 2
Query:  233 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            SYL G  PGDYG+D  GLS DPE    F + + L   EVI+  +AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:    8 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSTWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 179          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.070e-16
Identity = 70/202 (34.65%), Postives = 99/202 (49.01%), Query Frame = 2
Query:  218 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA+  +   + K++ +KNGRLA +  +      ++   GP
Sbjct:   25 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGP 201          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 72/207 (34.78%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  212 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGPTR 799
            F+   +  YL G  PGDYG+D  GLS DP+    + E       E+I+ R+A+LGA+G + PE+L + AG+  Q     WF+ G  I   G  NY  +   +          +++ LMG AE  R    AN GS G   FL          D  YPGGP F+PLGLA D     + K++ +KNGRLA +       + ++   GP +
Sbjct:   45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQ 228          
BLAST of EY659619 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 72/213 (33.80%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  191 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLAKDEKFMEDFKLQAMKNGRLACWPSWVTLFKVLLQELGP 793
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGLA D +   + K++ +KNGRLA +  +    + ++   GP
Sbjct:   52 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 239          
The following BLAST results are available for this feature:
BLAST of EY659619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB21_ARATH4.171e-1732.51Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB27_TOBAC9.293e-1734.27Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_PINTH9.293e-1734.27Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_PETSP1.585e-1632.61Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_SINAL1.585e-1634.27Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_MAIZE2.070e-1633.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA2.070e-1634.52Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PEA2.070e-1634.65Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNTE2.704e-1634.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP3.531e-1633.80Chlorophyll a-b binding protein 25, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-013-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659619 ID=EY659619; Name=EY659619; organism=Citrus sinensis; type=EST; length=910bp
ATTGAAGTTTAGAAACAGAGGAAAAAAGAAATTACAAATGGCAACCCAAG
CTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATT
CTTGGAGCAAGATCAGCTCAATTCCCAACTGGGTCATCAAGAAAAGGTTC
CTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACA
GACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGC
CTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGG
CACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCA
ACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATT
CTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCA
AACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTT
ACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGG
AGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCT
CGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAG
GACCTTTATTCAACCCTCTGGGTCTTGCGAAAGATGAGAAATTCATGGAA
GATTTCAAGCTCCAGGCAATGAAGAATGGAAGATTGGCATGTTGGCCATC
TTGGGTTACCTTGTTCAAGGTCTTGTTACAGGAGTTGGGCCCTACCAGAA
CCCATTGGATCACTTGGCTGATCCTTCCACAACAAGGTTTGCACTCCCCC
AATTTCACTGAGAGAGAATTTCTGTGCATTGCTTCGGATATTTATTCAAC
CTTGCATCCC
back to top